TCGA癌症数据库挖掘发表的大文章CNS级别汇总2019

TCGA

TCGA数据库挖掘发表的大文章CNS 级别汇总

TCGA Research Network Publications

A comprehensive list of publications by The Cancer Genome Atlas program. This list is updated as the TCGA Analysis Network continues to study and mine the data. Cancers Selected for Study lists original marker publications by cancer type. Supplemental and associated data files are located in the GDC.

The somatic genomic landscape of glioblastoma Exit Disclaimer
Cell. 2013;155(2):462-477. doi:10.1016/j.cell.2013.09.034

2014

Comprehensive molecular characterization of urothelial bladder carcinoma Exit Disclaimer
Nature. 2014;507(7492):315-322. doi:10.1038/nature12965

Comprehensive molecular profiling of lung adenocarcinoma Exit Disclaimer
Nature. 2014;511(7511):543-550. doi:10.1038/nature13385

Multiplatform analysis of 12 cancer types reveals molecular classification within and across tissues of origin Exit Disclaimer
Cell. 2014;158(4):929-944. doi:10.1016/j.cell.2014.06.049

The Somatic Genomic Landscape of Chromophobe Renal Cell Carcinoma Exit Disclaimer
Cancer Cell. 2014;26(3):319-330. doi:10.1016/j.ccr.2014.07.014

Comprehensive molecular characterization of gastric adenocarcinoma Exit Disclaimer
Nature. 2014;513(7517):202-209. doi:10.1038/nature13480

Integrated genomic characterization of papillary thyroid carcinoma Exit Disclaimer
Cell. 2014;159(3):676-690. doi:10.1016/j.cell.2014.09.050

2015

Comprehensive genomic characterization of head and neck squamous cell carcinomas Exit Disclaimer
Nature. 2015;517(7536):576-582. doi:10.1038/nature14129

Genomic Classification of Cutaneous Melanoma Exit Disclaimer
Cell. 2015;161(7):1681-1696. doi:10.1016/j.cell.2015.05.044

Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas Exit Disclaimer
N Engl J Med. 2015;372(26):2481-2498. doi:10.1056/NEJMoa1402121

Comprehensive Molecular Portraits of Invasive Lobular Breast Cancer Exit Disclaimer
Cell. 2015;163(2):506-519. doi:10.1016/j.cell.2015.09.033

The Molecular Taxonomy of Primary Prostate Cancer Exit Disclaimer
Cell. 2015;163(4):1011-1025. doi:10.1016/j.cell.2015.10.025

2016

Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma Exit Disclaimer
N Engl J Med. 2016;374(2):135-145. doi:10.1056/NEJMoa1505917

Comprehensive Pan-Genomic Characterization of Adrenocortical Carcinoma Exit Disclaimer
Cancer Cell. 2016;29(5):723-736. doi:10.1016/j.ccell.2016.04.002

Distinct patterns of somatic genome alterations in lung adenocarcinomas and squamous cell carcinomas Exit Disclaimer
Nat Genet. 2016;48(6):607-616. doi:10.1038/ng.3564

2017

Integrated genomic characterization of oesophageal carcinoma Exit Disclaimer
Nature. 2017;541(7636):169-175. doi:10.1038/nature20805

Comprehensive Molecular Characterization of Pheochromocytoma and Paraganglioma Exit Disclaimer
Cancer Cell. 2017;31(2):181-193. doi:10.1016/j.ccell.2017.01.001

Integrated Molecular Characterization of Uterine Carcinosarcoma Exit Disclaimer
Cancer Cell. 2017;31(3):411-423. doi:10.1016/j.ccell.2017.02.010

Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles Exit Disclaimer
Cell Rep. 2017;18(11):2780-2794. doi:10.1016/j.celrep.2017.02.033

Integrated genomic and molecular characterization of cervical cancer Exit Disclaimer
Nature. 2017;543(7645):378-384. doi:10.1038/nature21386

Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma Exit Disclaimer
Cell. 2017;169(7):1327-1341.e23. doi:10.1016/j.cell.2017.05.046

Integrative Analysis Identifies Four Molecular and Clinical Subsets in Uveal Melanoma Exit Disclaimer
Cancer Cell. 2017;32(2):204-220.e15. doi:10.1016/j.ccell.2017.07.003

Integrated Genomic Characterization of Pancreatic Ductal Adenocarcinoma Exit Disclaimer
Cancer Cell. 2017;32(2):185-203.e13. doi:10.1016/j.ccell.2017.07.007

Comprehensive Molecular Characterization of Muscle-Invasive Bladder Cancer Exit Disclaimer
Cell. 2017;171(3):540-556.e25. doi:10.1016/j.cell.2017.09.007

Comprehensive and Integrated Genomic Characterization of Adult Soft Tissue Sarcomas Exit Disclaimer
Cell. 2017;171(4):950-965.e28. doi:10.1016/j.cell.2017.10.014

2018

The Integrated Genomic Landscape of Thymic Epithelial Tumors Exit Disclaimer
Cancer Cell. 2018;33(2):244-258.e10. doi:10.1016/j.ccell.2018.01.003

Pan-cancer Alterations of the MYC Oncogene and Its Proximal Network across the Cancer Genome Atlas Exit Disclaimer
Cell Syst. 2018;6(3):282-300.e2. doi:10.1016/j.cels.2018.03.003

Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines Exit Disclaimer
Cell Syst. 2018;6(3):271-281.e7. doi:10.1016/j.cels.2018.03.002

Molecular Characterization and Clinical Relevance of Metabolic Expression Subtypes in Human Cancers Exit Disclaimer
Cell Rep. 2018;23(1):255-269.e4. doi:10.1016/j.celrep.2018.03.077

Systematic Analysis of Splice-Site-Creating Mutations in Cancer Exit Disclaimer
Cell Rep. 2018;23(1):270-281.e3. doi:10.1016/j.celrep.2018.03.052

Somatic Mutational Landscape of Splicing Factor Genes and Their Functional Consequences across 33 Cancer Types Exit Disclaimer
Cell Rep. 2018;23(1):282-296.e4. doi:10.1016/j.celrep.2018.01.088

The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell Carcinoma Exit Disclaimer
Cell Rep. 2018;23(1):313-326.e5. doi:10.1016/j.celrep.2018.03.075

Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context Exit Disclaimer
Cell Rep. 2018;23(1):297-312.e12. doi:10.1016/j.celrep.2018.03.064

Spatial Organization and Molecular Correlation of Tumor-Infiltrating Lymphocytes Using Deep Learning on Pathology Images Exit Disclaimer
Cell Rep. 2018;23(1):181-193.e7. doi:10.1016/j.celrep.2018.03.086

Machine Learning Detects Pan-cancer Ras Pathway Activation in The Cancer Genome Atlas Exit Disclaimer
Cell Rep. 2018;23(1):172-180.e3. doi:10.1016/j.celrep.2018.03.046

Genomic and Molecular Landscape of DNA Damage Repair Deficiency across The Cancer Genome Atlas Exit Disclaimer
Cell Rep. 2018;23(1):239-254.e6. doi:10.1016/j.celrep.2018.03.076

Driver Fusions and Their Implications in the Development and Treatment of Human Cancers Exit Disclaimer
Cell Rep. 2018;23(1):227-238.e3. doi:10.1016/j.celrep.2018.03.050

Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas Exit Disclaimer
Cell Rep. 2018;23(1):194-212.e6. doi:10.1016/j.celrep.2018.03.063

Integrated Genomic Analysis of the Ubiquitin Pathway across Cancer Types Exit Disclaimer
Cell Rep. 2018;23(1):213-226.e3. doi:10.1016/j.celrep.2018.03.047

SnapShot: TCGA-Analyzed Tumors Exit Disclaimer
Cell. 2018;173(2):530. doi:10.1016/j.cell.2018.03.059

Cell-of-Origin Patterns Dominate the Molecular Classification of 10,000 Tumors from 33 Types of Cancer Exit Disclaimer
Cell. 2018;173(2):291-304.e6. doi:10.1016/j.cell.2018.03.022

The Cancer Genome Atlas: Creating Lasting Value beyond Its Data Exit Disclaimer
Cell. 2018;173(2):283-285. doi:10.1016/j.cell.2018.03.042

Machine Learning Identifies Stemness Features Associated with Oncogenic Dedifferentiation Exit Disclaimer
Cell. 2018;173(2):338-354.e15. doi:10.1016/j.cell.2018.03.034

Oncogenic Signaling Pathways in The Cancer Genome Atlas Exit Disclaimer
Cell. 2018;173(2):321-337.e10. doi:10.1016/j.cell.2018.03.035

Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics Exit Disclaimer
Cell. 2018;173(2):305-320.e10. doi:10.1016/j.cell.2018.03.033

Comprehensive Characterization of Cancer Driver Genes and Mutations Exit Disclaimer
Cell. 2018;173(2):371-385.e18. doi:10.1016/j.cell.2018.02.060

An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics Exit Disclaimer
Cell. 2018;173(2):400-416.e11. doi:10.1016/j.cell.2018.02.052

Pathogenic Germline Variants in 10,389 Adult Cancers Exit Disclaimer
Cell. 2018;173(2):355-370.e14. doi:10.1016/j.cell.2018.03.039

A Pan-Cancer Analysis of Enhancer Expression in Nearly 9000 Patient Samples Exit Disclaimer
Cell. 2018;173(2):386-399.e12. doi:10.1016/j.cell.2018.03.027

Genomic and Functional Approaches to Understanding Cancer Aneuploidy Exit Disclaimer
Cancer Cell. 2018;33(4):676-689.e3. doi:10.1016/j.ccell.2018.03.007

A Comprehensive Pan-Cancer Molecular Study of Gynecologic and Breast Cancers Exit Disclaimer
Cancer Cell. 2018;33(4):690-705.e9. doi:10.1016/j.ccell.2018.03.014

Comparative Molecular Analysis of Gastrointestinal Adenocarcinomas Exit Disclaimer
Cancer Cell. 2018;33(4):721-735.e8. doi:10.1016/j.ccell.2018.03.010

lncRNA Epigenetic Landscape Analysis Identifies EPIC1 as an Oncogenic lncRNA that Interacts with MYC and Promotes Cell-Cycle Progression in Cancer Exit Disclaimer
Cancer Cell. 2018;33(4):706-720.e9. doi:10.1016/j.ccell.2018.03.006

The Immune Landscape of Cancer Exit Disclaimer
Immunity. 2018;48(4):812-830.e14. doi:10.1016/j.immuni.2018.03.023

Integrated Molecular Characterization of Testicular Germ Cell Tumors Exit Disclaimer
Cell Rep. 2018;23(11):3392-3406. doi:10.1016/j.celrep.2018.05.039

Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients Exit Disclaimer
Cancer Cell. 2018;34(2):211-224.e6. doi:10.1016/j.ccell.2018.07.001

A Pan-Cancer Analysis Reveals High-Frequency Genetic Alterations in Mediators of Signaling by the TGF-β Superfamily Exit Disclaimer
Cell Systems. 2018;7(4);422-437.e7. doi: 10.1016/j.cels.2018.08.010

Integrative Molecular Characterization of Malignant Pleural Mesothelioma Exit Disclaimer
Cancer Discovery. 2018;8(12):1548-1565. doi: 10.1158/2159-8290.CD-18-0804

The chromatin accessibility landscape of primary human cancers Exit Disclaimer
Science. 2018;362(6413). pii: eaav1898. doi: 10.1126/science.aav1898

Comprehensive Molecular Characterization of the Hippo Signaling Pathway in Cancer Exit Disclaimer
Cell Reports. 2018;25(5):1304-1317.e5. doi: 10.1016/j.celrep.2018.10.001

2019

Before and After: Comparison of Legacy and Harmonized TCGA Genomic Data Commons’ Data Exit Disclaimer
Cell Systems. 2019;9(1):24-34.e10. doi: 10.1016/j.cels.2019.06.006

发表于 2019-10-17 17:32
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分类：TCGA

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TCGA癌症数据库挖掘发表的大文章CNS级别汇总2019

TCGA Research Network Publications

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