TCGA数据库中癌症最新缩写中英文对照表获取方法 Project号 与癌种之间对应关系

TCGA数据库中癌症最新缩写对照表获取方法

如果想获得最新的信息,可以通过R包TCGAbiolinks中的getGDCprojects()方法得到:

if (!requireNamespace("BiocManager", quietly=TRUE)){
    install.packages("BiocManager")
}
BiocManager::install("TCGAbiolinks")
library(TCGAbiolinks)
getGDCprojects()

截止2019.10.17,TCGA数据库中,最新的癌种中文与英文对照表如下:  

Study Abbreviation Study Name 翻译
TCGA-LAML Acute Myeloid Leukemia 急性髓性白血病
TCGA-ACC Adrenocortical carcinoma 肾上腺皮质癌
TCGA-BLCA Bladder Urothelial Carcinoma 膀胱尿路上皮癌
TCGA-LGG Brain Lower Grade Glioma 脑低级脑胶质瘤
TCGA-BRCA Breast invasive carcinoma 乳腺浸润癌
TCGA-CESC Cervical squamous cell carcinoma and endocervical adenocarcinoma 宫颈鳞状细胞癌和宫颈内膜腺癌
TCGA-CHOL Cholangiocarcinoma 胆管癌
TCGA-LCML Chronic Myelogenous Leukemia 慢性粒细胞性白血病
TCGA-COAD Colon adenocarcinoma 结肠腺癌
TCGA-ESCA Esophageal carcinoma  食道癌
TCGA-GBM Glioblastoma multiforme 胶质母细胞瘤
TCGA-HNSC Head and Neck squamous cell carcinoma 头颈部鳞状细胞癌
TCGA-KICH Kidney Chromophobe 肾染色体
TCGA-KIRC Kidney renal clear cell carcinoma 肾脏肾透明细胞癌
TCGA-KIRP Kidney renal papillary cell carcinoma 肾肾乳头状细胞癌
TCGA-LIHC Liver hepatocellular carcinoma 肝肝细胞癌
TCGA-LUAD Lung adenocarcinoma 肺腺癌
TCGA-LUSC Lung squamous cell carcinoma 肺鳞状细胞癌
TCGA-DLBC Lymphoid Neoplasm Diffuse Large B-cell Lymphoma 淋巴样肿瘤弥漫性大B细胞淋巴瘤
TCGA-MESO Mesothelioma 间皮瘤
TCGA-OV Ovarian serous cystadenocarcinoma 卵巢浆液性囊腺癌
TCGA-PAAD Pancreatic adenocarcinoma 胰腺腺癌
TCGA-PCPG Pheochromocytoma and Paraganglioma 嗜铬细胞瘤和副神经节瘤
TCGA-PRAD Prostate adenocarcinoma 前列腺腺癌
TCGA-READ Rectum adenocarcinoma 直肠腺癌
TCGA-SARC Sarcoma 肉瘤
TCGA-SKCM Skin Cutaneous Melanoma 皮肤皮肤黑色素瘤
TCGA-STAD Stomach adenocarcinoma 胃腺癌
TCGA-TGCT Testicular Germ Cell Tumors 睾丸生殖细胞肿瘤
TCGA-THYM Thymoma 胸腺瘤
TCGA-THCA Thyroid carcinoma 甲状腺癌
TCGA-UCS Uterine Carcinosarcoma 子宫癌肉瘤
TCGA-UCEC Uterine Corpus Endometrial Carcinoma 子宫体子宫内膜癌
TCGA-UVM Uveal Melanoma 葡萄膜黑色素瘤

最新官方地址:https://gdc.cancer.gov/resources-tcga-users/tcga-code-tables/tcga-study-abbreviations


如果您对TCGA数据挖掘感兴趣,请学习我的TCGA系列课程:

TCGA-生存分析

TCGA-基因差异表达分析

TCGA-转录因子调控

TCGA-ceRNA调控网络分析

  • 发表于 2019-10-17 15:34
  • 阅读 ( 2668 )
  • 分类:TCGA

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