GATK - 组学大讲堂问答社区

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GATK|Timeout of 30000 milliseconds was reached while trying to acquire a lock on file raw.vcf.tmp.idx.

解决办法：https://www.omicsclass.com/article/2194 这里还有一个需要做的步骤，就是先将raw.vcf.tmp.idx文件找到并删除，一般情况下这个文件是空的。然后再在命令行中添加-disable_auto_in...

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rzx 发布于 2023-12-15 10:23

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GATK报错：Could not find walker with name: VariantFiltration

在使用GATK软件的时候出现报错命令行： /share/work/biosoft/java/latest/bin/java -XX:ParallelGCThreads=5 -Xmx50g -Djava.io.tmpdir=/share/nas5/renzx/project/zx-20230821-248_noref_...

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rzx 发布于 2023-09-21 14:57

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GATK报错| this implies a problem with the file locking support in your operating system

##### ERROR MESSAGE: Timeout of 30000 milliseconds was reached while trying to acquire a lock on file raw.vcf.tmp.idx. Since the GATK uses non-blocking lock acquisition calls that...

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rzx 发布于 2023-07-03 10:10

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