找到约 15 条结果

问题 泛基因家族分析数据准备里面,运行命令保留最长转录本结果都会报错,说是找不到文件,但文件存在在data目录下, ./.gff3.gz does not exist,Please verify the input file name/path

用的是泛基因组分析2.0,泛基因家族分析数据准备里面,运行命令保留最长转录本结果都会报错,说是找不到文件,但文件存在在data目录下 前面的建立批量链接也没有报错 影响到后面的命令都是报错找不到fa.gz或者gff3.gz

文章 R inferCNV 安装报错: rjags R 安装报错 automatic detection of JAGS failed. Please use pkg-config to locate the JAGS

1.首先安装依赖的 JAGS tar zxvf JAGS-4.3.0.tar.gz ./configure --prefix=/share/work/biosoft/JAGS/JAGS-v4.3.0 2.设置环境变量: export JAGS_PREFIX=/share/work/biosoft/JAGS/JAGS-v4.3.0 export JAGS_LIBDIR=$JAGS_PREFIX/lib export JAGS_INCLUDEDIR=$JAGS_PREFIX/include export LD_L...

文章 R语言-文件行名重复,对行名重命名

...make.names函数给行命名: d<-read.table("test.xls", header = T, check.names = F) row.names(d)<-make.names(d[,1],TRUE) 查看: 此时只需要把文件多余列删除: d<-d[,-1] 方法二,写循环重命名: d<-read.table("test.xls", header = T, check.names = F) >...

问题 最新qiime2教程16S注释报错

...analysis.py:143: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be usef...

文章 vt软件安装

...f function ‘lzma_easy_buffer_encode’cram/cram_io.c:684: error: ‘LZMA_CHECK_CRC32’ undeclared (first use in this function)cram/cram_io.c: In function ‘lzma_mem_inflate’:cram/cram_io.c:694: error: ‘lzma_stream’ undeclared (first use in this function)cram/cram_io.c:694: error: expected ...

文章 rMATS turbo使用

...t --statoff). both: prep + post. inte (integrity): check that the BAM filenames recorded by the prep task(s) match the BAM filenames for the current command line --statoff Skip the statistical analysis --paired-s...

问题 重测序circos运行失败

...       http://groups.google.com/group/circos-data-visualization   Please include this error, all your configuration, data files and the version   of Circos you're running (circos -v). Do not email me directly -- please use   the group.   Stack trace:  at /share/work/biosoft/circos...

文章 RagTag:同源锚定延伸

...     agp2fa          build a FASTA file from an AGP file      agpcheck        check for valid AGP file format      asmstats        assembly statistics      splitasm        split an assembly at gaps      delta2paf       delta to PAF file conversion      paf2delta...

问题 基因流分析时,treemix.r报错

...: ignoring environment value of R_HOME --> Q&A for bioinformatics, please visit the website: https://www.omicsclass.com/ --> R beginners ? I suggest your  learning  R language: https://study.omicsclass.com/index Error in library(R.utils) : there is no package called ‘R.utils’ Exe...

问题 安装 velocyto 报错

...///home/biosoft/velocyto.py   Installing build dependencies ... done   Checking if build backend supports build_editable ... done   Getting requirements to build editable ... error   error: subprocess-exited-with-error   × Getting requirements to build editable did not run successfully....

文章 windows10中基于WSL2的docker镜像存储位置更改

...ata\docker-desktop-data.tar and nothing more!Start Docker Desktop and run your containers. Final thoughts This whole approach seems to be a little hackish. I am surprised it was the only working solution. Is there anything actually blocking or preventing Docker Team or Microsoft to simplify this ...

问题 qiime2 v1.4版,用data2生成特征表时出错,应该怎么解决? Plugin error from dada2: An error was encountered while running DADA2 in R (return code 1), please inspect stdout and stderr to learn more. Debug info has been s

文章 在Windows系统中安装并使用seqkit工具

...|zsh|fish|powershell)  version         print version information and check for updateFlags:      --alphabet-guess-seq-length int   length of sequence prefix of the first FASTA record based on                                        which seqkit guesses the sequence type...

文章 转录组个性化分析之可变剪切分析工具:rMATS turbo

...). both: prep + post. inte                        (integrity): check that the BAM filenames recorded by                        the prep task(s) match the BAM filenames for the                        current command line  --statoff             Skip the stat...

问题 检查数据是否正确

代码: multiExpr=read.csv("5000.csv",header=T,comment.char = "",check.names=F)datTraits=read.csv("Trait1.csv",row.names=1,header=T,comment.char = "",check.names=F)allowWGCNAThreads()ALLOW_WGCNA_THREADS=4memory.limit(size = 20000)# 检查数据是否正确:exprSize = checkSets(multiExpr)# 统...