R inferCNV 安装报错: rjags R 安装报错 automatic detection of JAGS failed. Please use pkg-config to locate the JAGS

JAGS


1.首先安装依赖的 JAGS

tar zxvf JAGS-4.3.0.tar.gz

./configure --prefix=/share/work/biosoft/JAGS/JAGS-v4.3.0



2.设置环境变量:


export JAGS_PREFIX=/share/work/biosoft/JAGS/JAGS-v4.3.0

export JAGS_LIBDIR=$JAGS_PREFIX/lib

export JAGS_INCLUDEDIR=$JAGS_PREFIX/include

export LD_LIBRARY_PATH=/share/work/biosoft/JAGS/JAGS-v4.3.0/lib/:$LD_LIBRARY_PATH

3.安装 rjags
install.packages('rjags', configure.args='--with-jags-include=/share/work/biosoft/JAGS/JAGS-v4.3.0/include/JAGS --with-jags-lib=/share/work/biosoft/JAGS/JAGS-v4.3.0/lib/JAGS  --with-jags-modules=/share/work/biosoft/JAGS/JAGS-v4.3.0//lib/JAGS/modules-4  --with-jags-bin=/share/work/biosoft/JAGS/JAGS-v4.3.0//bin')

4.安装inferCNV
BiocManager::install("infercnv")

  • 发表于 2022-03-29 17:17
  • 阅读 ( 185 )
  • 分类:R

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