...-21 09:38:40+00:00 [ERROR] [Entrypoint]: mysqld failed while attempting tocheck configcommand was: mysqld --verbose --help --log-bin-index=/tmp/tmp.ogWM7TzzGmmysqld: Can't read dir of '/etc/mysql/conf.d/' (Errcode: 2 - No such file or directory)mysqld: [ERROR] Fatal error in defaults handling. Prog...
... -9984 ( X509 - Certificate verification failed, e.g. CRL, CA or signature check failed )
2022-09-27T11:33:05 prefetch.2.8.0 sys: mbedtls_ssl_get_verify_result returned 0x8 ( !! The certificate is not correctly signed by the trusted CA )
2022-09-27T11:33:05 prefetch.2.8.0 err: path not found w...
... <NON_REF> as an allele but that is not the case at position 763769; please use the Haplotype Caller with gVCF output to generate appropriate records。由于缺乏bam文件我只能尝试别的方法合并，当使用bcftools时提示：X602.g.vcf.gz was expected to contain a single sample bu...
...
import gzipimport argparsedef extract_gene_names(input_fastq_gz, output_file): with gzip.open(input_fastq_gz, 'rt') as fastq_gz, open(output_file, 'w') as out_file: line_count = 0 for line in fastq_gz: line_count += 1 if line_count % 4 =...
... GDCdownload(query = query,
+ directory = DataDirectory,files.per.chunk=6, method='client')
Downloading data for project TCGA-COAD
Of the 521 files for download 521 already exist.
All samples have been already downloaded
> # 保存结果
> data <- GDCprepare(query = ...