下载COAD数据提示列不一致保存不成功

> # 下载数据, 数据比较大,耐心等待

> GDCdownload(query = query,

+             directory = DataDirectory,files.per.chunk=6, method='client')

Downloading data for project TCGA-COAD

Of the 521 files for download 521 already exist.

All samples have been already downloaded

> # 保存结果

> data <- GDCprepare(query = query, 

+                    save = TRUE, 

+                    directory =  DataDirectory,

+                    save.filename = FileNameData)

|========================================================| 100%    1 MB

  |=============================================================| 100%

Starting to add information to samples

 => Add clinical information to samples

Error in rbindlist(l, use.names, fill, idcol) : 

  Item 2 has 62 columns, inconsistent with item 1 which has 63 columns. To fill missing columns use fill=TRUE.

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1 个回答

omicsgene - 生物信息
擅长:重测序,遗传进化,转录组,GWAS

可能有些文件下载不完整,建议换个目录重新下载运行代码。

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