找到约 15 条结果

文章 cactus-bin-v2.9.9 安装笔记

...2a9f41mkdir buildcd build#cmake -DZIG=OFF -DWFA_GITMODULE=ON -DCMAKE_BUILD_TYPE=Debug ..export CC=/share/work/biosoft/gcc/latest/bin/gccexport CXX=/share/work/biosoft/gcc/latest/bin/g++cmake -DZIG=OFF -DWFA_GITMODULE=ON -DCMAKE_BUILD_TYPE=Debug -DCMAKE_C_FLAGS="-pthread"  -DCMAKE_CXX_FLAGS="-pthrea...

文章 利用SNP构建指纹图谱!SNPT的使用教程!

...可以做的分析: Indentify unique SNPs profiles and assign sequence types(MST);Calculate allele frequencies;Find informative SNPs;Calculate D (Index of the Discrininatory Ability);Find the set(s) of minimum SNPs;Output MST data file in mega and interleaved mega format. 输入的文件格式...

文章 安装gdal报错

...-libs-3.4.0-2.el9.x86_64 requires libarmadillo.so.10()(64bit), but none of the providers can be installed  - package gdal-3.4.0-2.el9.x86_64 requires libgdal.so.30()(64bit), but none of the providers can be installed  - package gdal-3.4.0-2.el9.x86_64 requires gdal-libs(x86-64) = 3.4.0-2.el9, but ...

文章 STRING蛋白互作网络图绘制及子网络分析

...幅精美的互作网络图十分重要。 例如2021年5月发表在Mol Ther Nucleic Acids中的文献《Comprehensive analysis to identify DLEU2L/TAOK1 axis as a prognostic biomarker in hepatocellular carcinoma》,影响因子8.89。作者首先分析PTEN相关的差异基因(lncRNA、mRNA、...

文章 BSA分析中QTL-seq 分析:95% 99%阈值置信区间是如何计算的

...####################snp_index<-function(read_depth,ratio_of_genotype_in_the_population_in_A){x1<-rbinom(1,read_depth,ratio_of_genotype_in_the_population_in_A)return(x1/read_depth) }################################################################################################for (key_individu...

问题 gwas分析群体画进化树

...vironment value of R_HOME --> Q&A for bioinformatics, please visit the website: https://www.omicsclass.com/ --> R beginners ? I suggest your  learning  R language: https://study.omicsclass.com/index Registered S3 methods overwritten by 'treeio':   method              from  ...

问题 使用tcga_gene_exp_download.r下载TCGA数据始终无法产生gene expression相关的文件 killed

...----------------- oo Filtering results -------------------- ooo By file.type ---------------- oo Checking data ---------------- ooo Check if there are duplicated cases Warning: There are more than one file for the same case. Please verify query results. You can use the command View(getResult...

问题 asv分类报错

...conda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/q2cli/click/type.py", line 116, in _convert_input    result, error = q2cli.util._load_input(value)  File "/root/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/q2cli/util.py", line 397, in _load_input    artifac...

文章 gdal 报错dnf安装包错

...3-2.el9.x86_64 from epel requires libarmadillo.so.12()(64bit), but none of the providers can be installed   - package gdal-3.4.3-2.el9.x86_64 from epel requires libgdal.so.30()(64bit), but none of the providers can be installed   - package gdal-3.4.3-2.el9.x86_64 from epel requires gdal-libs(x86...

问题 双通道平台数据标准化,scan protocol。

...Data) 我用的GSE8205的 Scan protocol 为 Axon 4000B scanner. Both the 635nm (red, Cy5) and 532nm (green, Cy3) channels are scanned simultaneously at 100% laser power, the PMT set between 600 and 950. Slides are scanned at a resolution of 10micron 我将课程代码中的 genepix 改成 axo...

文章 相关性分析及散点图绘制-脚本使用

... -m meta, --meta meta Input contains two columns of data for calculating the correlation[required] -n name, --name name Specifies the column name of the column[optional,default:IRPS] -c cor_name, --cor_name cor_name The c...

文章 sankey_plot.r绘制桑基图

...p message and exit -i input, --input input input the matrix [required] -g group [group ...], --group group [group ...] input column names of three groups [required] -c color, --color color column to fill color [required] ...

文章 亚型划分比较波浪图(桑基图)绘制

...章中我们有时会看到她的身影。 比如在一篇2021年发表于The Journal for ImmunoTherapy of Cancer上的影响因子为13.75的文献《m6A modification patterns and tumor immune landscape in clear cell renal carcinoma》中,作者利用桑基图来描绘m6A簇、免疫亚型和m6A...

问题 基因组重测序使用qualimap 出现Exception in thread "main" java.awt.AWTError: Can't connect to X11 window server using 'localhost:18.0' as the value of the DISPLAY variable.

...r ${bwa_qcdir}/${name}.depth_and_coverage_report done if [ $? -eq 0 ]; then        touch  ${bwa_qcdir}/ok.cucumber_bwa.qc.status     else        touch  ${bwa_qcdir}/failed.cucumber_bwa.qc.status fi 最后运行的时候  #1.比对率分析和#2.片段inner size,片段选择...

问题 老师您好,我在运行OrthoFinder2时,出现下面报错,请老师解答

...er_v2.5.4/scripts_of/parallel_task_manager.py", line 209, in Worker_RunCommands_And_Move fn(fns) File "/share/work/biosoft/OrthoFinder/OrthoFinder_v2.5.4/scripts_of/trees_msa.py", line 262, in trim_fn trim.main(fn, fn, 0.1, 500, 0.75) File "/share/work/biosoft/OrthoFinder/OrthoFinder_v2....