找到约 15 条结果

问题 利用cicro绘图时遇到错误

... ERROR ***       cwd: /work/my_gene_family/09.circos       command: /share/work/biosoft/circos/latest/bin/circos -conf config.txt       -outputdir ./ -outputfile HSP90   You have asked to draw [1190] ideograms, but the maximum is currently set at   [200]. To increase this numbe...

文章 ggtern 安装报错

** inst ** byte-compile and prepare package for lazy loading Error in get(x, envir = ns, inherits = FALSE) :    object 'message_wrap' not found Error: unable to load R code in package ‘ggtern’ Execution halted ERROR: lazy loading failed for package ‘ggtern’ * removing ‘/share/bios...

文章 python版本MCScanX分析方法

...析方法,仅供参考: Genomic synteny among C. annuum, C.chinenese and C.baccatum The genomes of C. annuum, C.chinenese and C.baccatum were retrieved from PGP (http://peppergenome.snu.ac.kr/download.php).The C. annuum genome was compared to C.chinenese and C.baccatum  genomes using the M...

文章 topGO报错

...                                     "('", ontology, "') AND go_id IN (", qTerms, ");",                                     sep = ""))                    termsNames <- retVal$term          names(termsNames) <- retVal$go_id            ...

问题 转录组KEGG富集分析出现问题。

... Qing-Yu He. DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis. Bioinformatics 2015, 31(4):608-609   Loading required package: org.Hs.eg.db Loading required package: AnnotationDbi Loading required package: stats4 Loading required package: BiocGenerics Loadi...

文章 TCGA数据库中癌症最新缩写中英文对照表获取方法 Project号 与癌种之间对应关系

... carcinoma 乳腺浸润癌 TCGA-CESC Cervical squamous cell carcinoma and endocervical adenocarcinoma 宫颈鳞状细胞癌和宫颈内膜腺癌 TCGA-CHOL Cholangiocarcinoma 胆管癌 TCGA-LCML Chronic Myelogenous Leukemia 慢性粒细胞性白血病 TCGA-COAD Colon adenocarcinom...

问题 关于RNAseq的docker分析中获取基因长度报错问题

...h_from_gtf.py", line 51, in <module>    if kvs['gene_id'] in geneL and kvs['transcript_id'] in geneL[kvs['gene_id']]:KeyError: 'gene_id'gtf如下:请教老师如何解决这个问题,不胜感激!

文章 批次效应移除算法

... because measurements are affected by laboratory conditions, reagent lots, and personnel differences. This becomes a major problem when batch effects are confounded with an outcome of interest and lead to incorrect conclusions. In this chapter, we describe batch effects in detail: how to detect, int...

文章 转录组个性化分析之可变剪切分析工具:rMATS turbo

...ns]optional arguments: -h, --help            show this help message and exit --version             show program's version number and exit  --gtf GTF             An annotation of genes and transcripts in GTF format --b1 B1               A text file containing a comma s...

文章 bwa-mem2的用法

...定输出文件 -t 指定线程数 也可以直接在末尾使用 > and 2>来输出sam文件和log日志 和 –M 可以兼容Picard -R 可以指定read group头部,可被添加到输出文件头部

文章 计算肿瘤纯度和免疫评分 R包总结

...ypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1."Cancer Cell 2010, 17:98-110. [1] https://www.genepattern.org/modules/docs/ABSOLUTE/2 [2] http://software.broadinstitute.org/cancer/cga/absolute_run [3] http://software.broadinstitute.org/cancer/software/genep...

问题 关于annover建库问题

...Picard's command line syntax is changing. ********** ********** For more information, please see: ********** https://github.com/broadinstitute/picard/wiki/Command-Line-Syntax-Transition-For-Users-(Pre-Transition) ********** ********** The command line looks like this in the new syntax: *******...

文章 利用NCBI当中的CD-search工具预测基因的保守结构域

...at represent various confidence levels (specific hits, non-specific hits) and domain model scope (superfamilies, multi-domains). They can be seen in both the Concise display and Full display, except for non-specific hits, which are shown only in the Full Display.PSSM-IDA PSSM ID is the unique...

文章 RIP实验技术

...tochondrial iron chelation ameliorates cigarette smoke-induced bronchitis and emphysema in mice. Nat Med 22(2):163-174(2016).         3.Identification and dynamic changes of RNAs isolated from RALY-containing ribonucleoprotein complexes. Nucleic Acids Res(2017).

问题 基因组注释Braker里面的报错

...f3 --skip_fixing_broken_genes” 报错“# Mon Aug 12 20:10:06 2024: Log information is stored in file /work/work/xsyj/genome_annotation/03.Braker/braker/braker.log ERROR in file /share/work/biosoft/BRAKER/latest/scripts//braker.pl at line 6666 Failed to execute: perl /share/work/biosoft/GeneMar...