test_7和8没跑成功。有没有检测到基因流需要根据introgression进行判断,检测出来就是P1 => P4这种标识
我用命令(python3 $scriptdir/dfoiliator-main/dfoiliator_modify.py -i subsample.reheader.min4.fasta -t test_set1.tsv)进行分析的出现了错误,但是也出现了结果。最后运行的结果如下:这是说明结果是没有检测到基因渗入吗?运行命令出现的错误对结果有影响没有?
test_namep1p2p3p4outdfoil_modesignatureintrogressionCheck
test_1CaucasianturMarkhorMidAsianibexEastAsiaOutgroupdfoil+ + + -Unrecognized pattern for DFO/DIL/DFI/DOLfailed/failed/pass
test_2MarkhorSoutheastAsiaMidAsianibexEastAsiaOutgroupdfoil+ - + -Unrecognized pattern for DFO/DIL/DFI/DOLfailed/failed/pass
test_3MarkhorSouthAsiaMidAsianibexEastAsiaOutgroupdfoil+ - + -Unrecognized pattern for DFO/DIL/DFI/DOLfailed/failed/pass
test_4MarkhorWestAsiaMidAsianibexEastAsiaOutgroupdfoil+ - + -Unrecognized pattern for DFO/DIL/DFI/DOLfailed/failed/pass
test_5MarkhorBezoarwildgoatMidAsianibexEastAsiaOutgroupdfoil+ - + 0Unrecognized pattern for DFO/DIL/DFI/DOLfailed/failed/pass
test_6MarkhorCentralAsiaMidAsianibexEastAsiaOutgroupdfoil+ - + -Unrecognized pattern for DFO/DIL/DFI/DOLfailed/failed/pass
test_7MarkhorEastAsiaMidAsianibexMarkhorOutgroupdfoil* * * *NApass/pass/pass
test_8MarkhorEastAsiaMidAsianibexEastAsiaOutgroupdfoil* * * *NApass/pass/pass