记录一个数据下载：GSE12417
geo_gene_exp_download.r
Rscript ../tcga_geo/scripts/geo_gene_exp_download.r -g GSE12417 -o GSE12417-array --skip 27
直接下载会报错，这里手动下载：
#手动下载 matrix
wget -c https://ftp.ncbi.nlm.nih.gov/geo/series/GSE12nnn/GSE12417/matrix/GSE12417-GPL570_series_matrix.txt.gz -O GSE12417-array/GSE12417-GPL570_series_matrix.txt.gz
wget -c https://ftp.ncbi.nlm.nih.gov/geo/series/GSE12nnn/GSE12417/matrix/GSE12417-GPL96_series_matrix.txt.gz -O GSE12417-array/GSE12417-GPL96_series_matrix.txt.gz
wget -c https://ftp.ncbi.nlm.nih.gov/geo/series/GSE12nnn/GSE12417/matrix/GSE12417-GPL97_series_matrix.txt.gz -O GSE12417-array/GSE12417-GPL97_series_matrix.txt.gz
#手动下载 GPL注释信息
wget -c https://ftp.ncbi.nlm.nih.gov/geo/platforms/GPLnnn/GPL96/annot/GPL96.annot.gz -O GSE12417-array/GPL96.annot.gz
wget -c https://ftp.ncbi.nlm.nih.gov/geo/platforms/GPLnnn/GPL97/annot/GPL97.annot.gz -O GSE12417-array/GPL97.annot.gz
wget -c -O GSE12417-array/GPL570.annot.gz
#再次运行：
Rscript ../tcga_geo/scripts/geo_gene_exp_download.r -g GSE12417 -o GSE12417-array --skip 27
结果如下：
- 发表于 2023-12-04 10:14
- 阅读 ( 2402 )
- 分类：GEO
