找到约 15 条结果

问题 Blast2go本地化过程中，运行官方文件b2g4pipe_v2.5.zip中“runPipeExample.sh“报错“The host did not accept the connection within timeout of 60000 ms;”

...整导入，然而运行官方软件“sh runPipeExample.sh”时报错“The host did not accept the connection within timeout of 60000 ms;”，请问如何解决，希望详细点。 Prepare data for GoSlim. 8 Sequences send to preform GoSlim: goslim_generic.obo Error while generating GoSlim res...

文章 tassel 软件做GWAS关联分析多年多点表型数据整理格式

...es not require users to provide information on number of rows and columns. The file starts with the key word <Trait> followed by names of columns. The column for line should not be labeled and elements are tab delimited. Example 1, Simple list of trait values: Example 2, Traits data collec...

文章 GWAS根据遗传率和QTL的数量产出模拟表型数据

...arker data of 31,260 SNPs for 346 soybean accessions. #Read Soybean Genotype data fileD<-read.big.matrix("GN.txt", type="char", sep="\t",head = TRUE)dim(D)D=D[,2:31261]D1=as.data.frame(as.matrix(D))D2=t(D1)QTL <-100*(1:20) #pick 20 QTLu <-rep(0,31620) #marker effectsu[QTL] <- 1g <-...

文章 群体遗传进化与GWAS分析动植物文献

...n W,Xinyue S,Xin J, et al. Identification of rice (Oryza sativa L.) genes involved in sheath blight resistance via a genome-wide association study[J]. Plant Biotechnology Journal.2021.单倍型( haplotype )是共存于单条染色体上的一系列遗传变异位点的组合，其在染色体上形...

问题 误: 无法分配大小为7.4 Mb的矢量 Killed after 9 m

...lation" > platform <- "Illumina Human Methylation 450" > sample_type <- "Primary solid Tumor"    > legacy <- FALSE > # 工作目录如果不存在，则创建目录 > if( !file.exists(work_dir) ){ +   if( !dir.create(work_dir, showWarnings = FALSE, recursive = TRUE)...

文章 immune_bar_plot.r 免疫侵润分析bar绘图

...                        input legend tittle name [default cell type]  -a xlab, --xlab xlab  input xlab [default sample]  -b ylab, --ylab ylab  input ylab [default fraction]  -m metadata, --metadata metadata                        input metadata file [default NULL]  -g g...

文章 seurat_sc_cluster.r 使用帮助：

...ation to run. Can be uwot:Runs umap via                        the uwot R package; uwot-learn:Runs umap via the uwot                        R package and return the learned umap model;umap-                        learn:Run the Seurat wrapper of the python umap-lea...

问题 使用NCBI下载的基因组和gff文件进行基因家族分析时，保留编码蛋白基因的命令似乎无法识别NCBI的gff文件（描述中为日志，图片为尝试获取的gff文件）

...t_sp_filter_feature_by_attribute_value.pl --gff  $gff --attribute gene_biotype --value protein_coding -t '!' -o $species.protein_coding.gff3 Using standard /share/work/biosoft/perl/perl-5.22.1/lib/site_perl/5.22.1/auto/share/dist/AGAT/config.yaml file 07/31/2024 at 13h07m54s usage: /share/work/b...

文章 R安装units包报错解决方法

...yeschecking for stdlib.h... yeschecking for string.h... yeschecking for inttypes.h... yeschecking for stdint.h... yeschecking for strings.h... yeschecking for sys/stat.h... yeschecking for sys/types.h... yeschecking for unistd.h... yeschecking for _Bool... nochecking for stdbool.h that conforms to C...

问题 使用ensembl下载的人gff3文件进行基因家族分析时，保留编码蛋白基因的命令无法识别人的gff3文件（描述中为日志）

...# agat_sp_filter_feature_by_attribute_value.pl --gff  $gff --attribute biotype --value protein_coding -t '!' -o $species.protein_coding.gff3 Using standard /share/work/biosoft/perl/perl-5.22.1/lib/site_perl/5.22.1/auto/share/dist/AGAT/config.yaml file 08/01/2024 at 10h36m50s usage: /share/work/b...

问题 使用xpclr分析出现TypeError: ufunc 'true_divide' not supported for the input types'

...da3/lib/python3.7/site-packages/allel/io/vcf_read.py:1454: UserWarning: no type for field 'variants/None', assuming object   warnings.warn('no type for field %r, assuming %s' % (f, normed_types[f])) /public/home/weijiehong/miniconda3/lib/python3.7/site-packages/allel/io/vcf_read.py:1048: UserWarn...

问题 是没有gene-family了嘛

PS C:\Users\Administrator> docker pull omicsclass/gene-family:v1.0.1 What's next:     View a summary of image vulnerabilities and recommendations → docker scout quickview omicsclass/gene-family:v1.0.1 Error response from daemon: pull access denied for omicsclass/gene-family, repository d...

文章 文本去重并统计重复次数

...ello World. Apple and Nokia. Hello World. I wanna buy an Apple device. The Iphone of Apple company. Hello World. The Iphone of Apple company. My name is Friendfish. Hello World. Apple and Nokia. 命令如下：$ sort test.txt | uniq -c | sort -rn 4 Hello World. 2 The Iphone of Apple comp...

文章 基因家族的定义和形成方式（加倍与扩张）

...上，形成一个序列相似、功能相近的基因簇。According to the descriptions of Holub [1], a chromosomal region within 200 kb containing two or more genes is defined as a tandem duplication event.3.染色体片段复制(Segmental duplication)：导致复制的基因距离较远，甚至...

文章 GOChord_plot.r GOplot包绘制GO弦图

...O_data GO_DATA input a GO enrichment analysis data,the data with columns for 'category','ID','term',adjusted p-value('adj_pval') and 'genes'[required] -d DEG_DATA, --deg_data DEG_DATA input the result o...