找到约 15 条结果

问题 GWAS分析绘制进化树遇到下面问题是什么意思,请问怎么解决?

... Zhu, Yi Guan, Tommy Tsan-Yuk Lam. ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data. Methods in Ecology and Evolution. 2017, 8(1):28-36. doi:10.1111/2041-210X.12628 LG Wang, TTY Lam, S Xu, Z Dai, L Zhou, T Feng, P Guo, ...

文章 全外显子测序疾病相关基因变异位点过滤标准及参考文献

...点保守性过滤 SIFT, Polyphen2, LRT, Grantham scale, Mutation Taster and PhyloP 可以用ANNOVAR一站式注释dbNSFP,各种方法的算法参见文章,使用说明见ANNOVAR官网:ljb 2.基于位点的变异频率的稀有性 filtering by MAF < 5% (ESP and 1000G), nonsynonymous changes...

文章 批量邮件推送python代码模板,可支持html邮件格式

...t;In the introductory post for this series we spoke a little about how web designers can benefit by using Vue. In this tutorial we’ll learn how to get Vue up..</p>            </td>            <td width="15"></td>            <td width="200" valign="top"&...

问题 GO注释:blast了nr数据库并通过blast2go获得了GO注释号;也通过blast了swiss-prot数据库获得了GO注释号。这两个结果需要合并吗?

...下:CDS sequences with SSR were aligned against NCBI non-redundant (nr) and SWISS-PROT protein databases (http://www.uniprot.org), using BLASTx (Altschul et al., 1997) with a cutoff E-value 1E-5. Blast results were imported into Blast2Go (Conesa et al., 2005) for GO term mapping. Mapping result...

文章 你不知道的微生物互作分析方法

...法的选择。例如下图的组合方式:Pearson、Spearman、Mutual information、BC以及KLD。 通过该窗口选择Automatic threshold setting,设置网络阈值,选择edgeNumber 和Top and bottom,并填写上对应的数值100,可以按照实际填写。 ReBoot 进...

问题 ALLHIC显示找不到sample.bwa_mem.bam

...你好,在用ALLHIC1或者2的时候都报错,均有显示[E::idx_find_and_load] Could not retrieve index file for '/work/genome/assembly/output/docker/GM/30.ALLHiC2/sample.bwa_mem.bam'。但该地址下是有该文件的。 第二个问题是ALLHIC1时形成了sample.clean.counts_GATC.13g1.txt...

文章 fasta格式文件介绍 What is FASTA format?

...述信息可有可无 Sequences are expected to be represented in the standard IUB/IUPAC amino acid and nucleic acid codes, with these exceptions: lower-case letters are accepted and are mapped into upper-case;a single hyphen or dash can be used to represent a gap of indeterminate length;in am...

文章 鲈鱼MAPK基因家族分析文献下载及解读

...文献下载:Identification of mapk gene family in Lateolabrax maculatus and their expression profiles in response to hypoxia and salinity challenges.pdf(点此题目下载原文) 基因家族分析发文章溜不溜?口说无凭,以文章为据!基因家族分析学习链接:基因...

问题 gwas分析群体画进化树

... Zhu, Yi Guan, Tommy Tsan-Yuk Lam. ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data. Methods in Ecology and Evolution. 2017, 8(1):28-36. doi:10.1111/2041-210X.12628 Guangchuang Yu. Using ggtree to visualize data on tree...

问题 安装 velocyto 报错

...    [end of output]   note: This error originates from a subprocess, and is likely not a problem with pip. error: subprocess-exited-with-error × Getting requirements to build editable did not run successfully. │ exit code: 1 ╰─> See above for output. note: This error origina...

问题 What can Amino Acid Structure Chart and Reference Table help us do?

There are 20 standard amino acids in the amino acid table, what are the functions of them?

问题 reseqv2.0镜像annovar报错

...use --nopolish to change this behavior) NOTICE: Running with system command <convert2annovar.pl  -includeinfo -allsample -withfreq -format vcf4 /work/my_reseq/4.snp_indel/var_qc/pyb4.clean.vcf.gz > /work/my_reseq/5.var_ann/snp.avinput> NOTICE: Finished reading 656047 lines from VCF fil...

文章 STRING蛋白互作网络图绘制及子网络分析

...exit -e filepath, --edge filepath input the edge information of network,[required] -v filepath, --vertex filepath input the vertex information of network,[required] -f from, --from from the name of the start gene column [required] -t to, --to ...

问题 tassel报错,[Thread-9] ERROR net.maizegenetics.plugindef.AbstractPlugin - 0,软件运行有些表型数据时无问题,但大部分表型数据运行时出现该错误

...ific BLAS/LAPACK not found. Using system-independent EJML for DoubleMatrix operations. [Thread-9] INFO net.maizegenetics.pipeline.TasselPipeline - net.maizegenetics.analysis.association.FixedEffectLMPlugin: time: Feb 16, 2024 15:09:52: progress: 0% [Thread-9] INFO net.maizegenetics.pipeline.Tassel...

文章 如何看懂从TCGA下载的甲基化数据

... siteBeta ValueRepresents the ratio between the methylated array intensity and total array intensity, falls between 0 (lower levels of methylation) and 1 (higher levels of methylation)ChromosomeThe chromosome in which the probe binding site is locatedStartThe start of the CpG site on the chromosomeE...