... --task {prep,post,both,inte} Specify which step(s) of rMATS to run. Default: both. prep: preprocess BAMs and generate a .rmats file. post: load .rmats file(s) into memory, detect and ...
...k/biosoft/gcc/gcc-v6.4.0/bin/gcc
configure: CXX: g++ -std=gnu++11
checking for gdal-config... no
no
configure: error: gdal-config not found or not executable.
ERROR: configuration failed for package ‘sf’
* removing ‘/share/work/biosoft/R/R-v3.6.1/lib64/R/library/sf’
ERROR: dependency ‘sf...
...ontamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
4. aliquot_annotation_updated：Annotation refers...
...ure it to utilize drive D: instead. There is a Microsoft documentation, which describes a WSL configuration file, but it seems to be a bit old these days. At the same time I couldn’t find anything useful on Docker website itself.
What I finally spot was this tricky solution from Franks Chow ...
报错信息：ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
Error in file(file, "rt") : cannot open the connection
Calls: read.table -> file
In addition: Warning message:
In file(...
...数说明：
The following 'modifiers' (Key-Value pairs) are supported for heatmap:universal modifiers!Title or !Legendtexttitle of the legend; default = name of the dataset!ShowLegends0 or 10 : hide legends; 1 : show legends!opacityfloat number between 0 to 1opacity of the datasetmodifiers share...
...g with a hash are comments and ignored during parsing#select the separatorwhichis used to delimit the data below (TAB,SPACE or COMMA).This separator must be used throught this file (except in the SEPARATOR line, which uses space).#SEPARATOR TABSEPARATOR SPACE#SEPARATOR COMMA#label is used in the l...
...开gap得分[Integer]-1 -E延伸gap得分[Integer]-1 -XX dropoff value for gapped alignment (in bits)[Integer]0blastn 30, megablast 20, tblastx 0, all others 15-I显示gi号Show GI’s in deflines[T/F]F -q核酸错配罚分[Integer]-3blastn only-r核酸匹配得分[Integer]1blastn only-vNumber of...
...asenhmmscan: search DNA sequence against a DNA profile databasehmmfetch: retrieve profile(s) from a profile filehmmstat: show summary statistics for a profile filehmmemit: generate (sample) sequences from a profilehmmlogo: produce a conservation logo graphic from a profilehmmconvert: convert b...
...iants loaded from .bim file.2045265 missing IDs set.684 people (0 males, 0 females, 684 ambiguous) loaded from .fam.Ambiguous sex IDs written to plink_pca.nosex .Using up to 23 threads (change this with --threads).Before main variant filters, 684 founders and 0 nonfounders present.Calculating allele...
...the child features to reflect this change.
Why? because we do not know to which L1 the child feature was part-of because several Parent have similar ID.
@ the feature is:
NC_049979.1 RefSeq cDNA_match 22755 22861 . - . ID "nbis-cdna_match-1...
...ies and see whether the slope of the line is around 1. An improved method, whichis basically a scaled, 45 degree rotation of the R vs. G plot is an MA-plot.[4] The MA-plot is a plot of the distribution of the red/green intensity ratio ('M') plotted by the average intensity ('A'). M and A are defin...