...etadata
input the path to the clinical information file
containing survival data[required]
--surv_cut Whether to group by surv_cutpoint
function[optional,default:False]
--median_cut Whether to group by me...
...ENOME_FRAGMENT，bed文件路径（绝对路径）
config-hicpro.txt
# Please change the variable settings below if necessary########################################################################### Paths and Settings - Do not edit !###########################################################...
hecking for strings.h... yeschecking for sys/stat.h... yeschecking for sys/types.h... yeschecking for unistd.h... yeschecking for gdal.h... yeschecking GDAL: linking with --libs only... yeschecking GDAL: /usr/share/gdal/pcs.csv readable... nochecking GDAL: checking whether PROJ is available for link...
...error of the above failed command:
Traceback (most recent call last):
File "/share/work/biosoft/conda/Miniconda3.8/envs/picrust2/bin/picrust2_pipeline.py", line 4, in <module>
__import__('pkg_resources').require('PICRUSt2==2.3.0b0')
File "/share/work/biosoft/conda/Miniconda3.8/...
... show this help message and exit -i data, --data data input data file path[required] -t time, --time time set suvival time column name [required] -e event, --event event set event column name must 0 or 1 code format ...
... set event column name [required]
-i immu, --immu immu input data file path[required]
-m method, --method method
a character string indicating which correlation
coefficient (or covariance) is to be computed. One of
"p...