找到约 15 条结果

文章 给一个fastq ID列表,输出指定ID对应的双端fastq文件:

.../);$keep{$tmp[0]}=1;}close(IN);my$i=0;while ( my $obj1=$fq1->next_seq() and my $obj2=$fq2->next_seq() ) {my$id1=$obj1->id;my$id2=$obj2->id;#print "$id1,$id2\n";#die;if( exists $keep{$id1} or exists $keep{$id2}){$fqo1->write_seq($obj1);$fqo2->write_seq($obj2);}}$fq1->close();$fq2...

问题 基因组重测序使用qualimap 出现Exception in thread "main" java.awt.AWTError: Can't connect to X11 window server using 'localhost:18.0' as the value of the DISPLAY variable.

...am -outfile report.pdf -outformat PDF  -outdir ${bwa_qcdir}/${name}.depth_and_coverage_report done if [ $? -eq 0 ]; then        touch  ${bwa_qcdir}/ok.cucumber_bwa.qc.status     else        touch  ${bwa_qcdir}/failed.cucumber_bwa.qc.status fi 最后运行的时候  #1.比对...

文章 茶树在非生物胁迫下的转录响应

...数量最多(20014),其次是organismal systems (E,13925)和genetic information (C,9452)。说明代谢相关的通路在Al响应的过程中可能被激活,参与了相关的生理过程。并且metabolism 过程可以细分为更多的代谢相关通路。 差异表达分析与GO富集 ...

文章 bioperl处理fasta和fastq序列截取反向互补翻译等等

...      -format => 'fasta');while ( my $seqobj1 = $in1->next_seq() and  my $seqobj2 = $in2->next_seq()) { # the human read-able id of the sequence my $id=$seqobj->id();  # string of sequence my $seq=$seqobj->seq();  # a description of the sequence my $desc=$seqobj->desc();  # ...

问题 RNAseq有参转录组分析差异表达分析免疫亚型之间差异表达这一环节出现以下问题

...ted. It will create various problems          with time zone changes and daylight saving time adjustments. The RTC          time is never updated, it relies on external facilities to maintain it.          If at all possible, use RTC in UTC by calling          'timedatectl set...

文章 clinvar数据库人类疾病数据库ANNOVAR数据库使用

...dentifiers in CLNDISDB"CLNDISDB ="Tag-value pairs of disease database name and identifier, e.g. OMIM:NNNNNN"CLNDISDBINCL ="For included Variant: Tag-value pairs of disease database name and identifier, e.g. OMIM:NNNNNN"CLNHGVS ="Top-level (primary assembly, alt, or patch) HGVS expression."CLNREVSTAT...

文章 subset_column.r 根据ID列表,取对应列的数据:

...IDoptional arguments:  -h, --help            show this help message and exit  -i input, --input input                        input matrix data [required]  -m idlist, --idlist idlist                        input column ID list ,default first column [required]  -c col...

文章 食管癌相关文章ESCC

...管鳞癌新辅助治疗耐受机制 发表期刊:Signal Transduction and Targeted Therapy(2023,39.3) 立题背景:食管癌位居全球癌症死因第六位,全球超过一半的食管癌患者在中国,且多以鳞癌为主。食管癌预后较差,患者就诊时多属疾病中...

文章 R包 CandiHap 进行单倍型分析

CandiHap是一款应用于全基因组关联分析(GWAS)后,快速分析基因单倍型来鉴定候选基因的一款友好软件。研究者可通过该软件对单个基因,或者对GWAS显著关联位点LD范围内所有基因进行单倍型分析,发现与性状显著关联的单倍型...

文章 性价比超高5个重测序发IF=6遗传进化文章

...迫相关; Torsten Günther1,2, Christian Lampei1, Ivan Barilar1, and Karl J. Schmid1. Genomic and phenotypic differentiation of Arabidopsis thaliana along altitudinal gradients in the North Italian Alps.2016.Molecular Ecology.

文章 hmmsearch搜索蛋白保守结构域结果说明

...icular domain’s bit score, if the rest of those reported sequences were random nonhomologous sequence (i.e. outside the other domain(s) that were sufficient to identified them as homologs in the first place)? (13) i-Evalue: The “independent E-value”, the E-value that the sequence/profile comp...

文章 Nature Medicine同期8篇论文,聚焦人工智能在医学领域的应用

...这8篇论文: 1 High-performance medicine: the convergence of human and artificial intelligence 高效医学:人类与智能的融合 作者:Eric J. Topol;单位:Scripps研究所 通过在所有部门中使用标记的大数据以及显著增强的计算能力和云存储,已经...

文章 GWAS抗性性状处理,耐盐,耐寒,耐旱等

...sing the stress susceptibility index (SSI) calculated according to Fischer and Maurer39 using the following formula: SSI = (1 − Ys/Yp)/D, where Ys = mean performance of a genotype under stress; Yp = mean performance of the same genotype without stress; D (stress intensity) = 1 − (mean Ys ...

文章 iTOL修改进化树的标签基因ID名称

...es (displayed in mouseover popups)#lines starting with a hash are comments and ignored during parsing#=================================================================##                    MANDATORY SETTINGS                           ##=========================================...

文章 SNP指纹图谱软件SNPT

...in/snpt 这个软件可以做的分析: Indentify unique SNPs profiles and assign sequence types(MST);Calculate allele frequencies;Find informative SNPs;Calculate D (Index of the Discrininatory Ability);Find the set(s) of minimum SNPs;Output MST data file in mega and interleaved mega format. ...