找到约 15 条结果

文章 subset_column.r 根据ID列表,取对应列的数据:

...IDoptional arguments:  -h, --help            show this help message and exit  -i input, --input input                        input matrix data [required]  -m idlist, --idlist idlist                        input column ID list ,default first column [required]  -c col...

文章 食管癌相关文章ESCC

...管鳞癌新辅助治疗耐受机制 发表期刊:Signal Transduction and Targeted Therapy(2023,39.3) 立题背景:食管癌位居全球癌症死因第六位,全球超过一半的食管癌患者在中国,且多以鳞癌为主。食管癌预后较差,患者就诊时多属疾病中...

文章 R包 CandiHap 进行单倍型分析

CandiHap是一款应用于全基因组关联分析(GWAS)后,快速分析基因单倍型来鉴定候选基因的一款友好软件。研究者可通过该软件对单个基因,或者对GWAS显著关联位点LD范围内所有基因进行单倍型分析,发现与性状显著关联的单倍型...

文章 性价比超高5个重测序发IF=6遗传进化文章

...迫相关; Torsten Günther1,2, Christian Lampei1, Ivan Barilar1, and Karl J. Schmid1. Genomic and phenotypic differentiation of Arabidopsis thaliana along altitudinal gradients in the North Italian Alps.2016.Molecular Ecology.

文章 hmmsearch搜索蛋白保守结构域结果说明

...icular domain’s bit score, if the rest of those reported sequences were random nonhomologous sequence (i.e. outside the other domain(s) that were sufficient to identified them as homologs in the first place)? (13) i-Evalue: The “independent E-value”, the E-value that the sequence/profile comp...

文章 Nature Medicine同期8篇论文,聚焦人工智能在医学领域的应用

...这8篇论文: 1 High-performance medicine: the convergence of human and artificial intelligence 高效医学:人类与智能的融合 作者:Eric J. Topol;单位:Scripps研究所 通过在所有部门中使用标记的大数据以及显著增强的计算能力和云存储,已经...

文章 GWAS抗性性状处理,耐盐,耐寒,耐旱等

...sing the stress susceptibility index (SSI) calculated according to Fischer and Maurer39 using the following formula: SSI = (1 − Ys/Yp)/D, where Ys = mean performance of a genotype under stress; Yp = mean performance of the same genotype without stress; D (stress intensity) = 1 − (mean Ys ...

文章 iTOL修改进化树的标签基因ID名称

...es (displayed in mouseover popups)#lines starting with a hash are comments and ignored during parsing#=================================================================##                    MANDATORY SETTINGS                           ##=========================================...

问题 RNA 速率分析Pseudotime vs latent time

I am doing scRNA-Seq analysis, and I am doing RNA velocity and pseudotime analyses as part of my analysis pipeline. Now, RNA velocity is carried out using scvelo, and this package generates a metric known as latent time. I am having a very had time seeing the difference between latent time and stand...

文章 SNP指纹图谱软件SNPT

...in/snpt 这个软件可以做的分析: Indentify unique SNPs profiles and assign sequence types(MST);Calculate allele frequencies;Find informative SNPs;Calculate D (Index of the Discrininatory Ability);Find the set(s) of minimum SNPs;Output MST data file in mega and interleaved mega format. ...

文章 bam文件转换fastq

...ased on the mate info                in the BAM R2 and Q2 tags.Tips:        If you want to create a single, interleaved FASTQ file        for paired-end data, you can just write both to /dev/stdout:        bedtools bamtofastq -i ...

文章 textshaping L :1:19: fatal error: hb-ft.h: No such file or directory

...type2 fribidi is already installed, check that 'pkg-config' is in yourPATH and PKG_CONFIG_PATH contains a harfbuzz freetype2 fribidi.pc file. If pkg-configis unavailable you can set INCLUDE_DIR and LIB_DIR manually via:R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...'---------------------...

问题 单细胞测序FindAllmarkers

...st one zero, cannot compute log geometric means data frame with 0 columns and 0 rows Error in `group_by_prepare()`: ! Must group by variables found in `.data`. • Column `cluster` is not found. Backtrace:     ▆  1. ├─obj.markers %>% group_by(cluster) %>% ...  2. ├─dplyr:...

文章 perl中判断数组中是否含有某个元素

...元素么? The any function has the same syntax as , accepting a block and a list of values, but it only returns true or false. True, if the block gives true for any of the values. False if none of them match. It also short circuits so on large lists this can be a lot faster. any函数的语法...

问题 老师,您好!key driver analysis的参考文献如下。请您帮我查查该分析方法的R语言包在哪里下载?

Identification of Key Causal Regulators in Gene Networks . Bin Zhang and Jun Zhu .Proceedings of the World Congress on Engineering 2013 Vol II, .