找到约 15 条结果

问题 在运行core_pan_gene_curve.r的时候报错

...e_pan_curve WARNING: ignoring environment value of R_HOME --> Q&A for bioinformatics, please visit the website: https://www.omicsclass.com/ --> R beginners ? I suggest your  learning  R language: https://study.omicsclass.com/index Attaching package: ‘dplyr’ The following obj...

问题 老师，您好，在用qiime2 运行dada2 时，报错

R version 4.1.1 (2021-08-10)  载入需要的程辑包：Rcpp Error: package or namespace load failed for ‘Rcpp’:  package ‘Rcpp’ was installed before R 4.0.0: please re-install it 错误: 无法载入程辑包‘Rcpp’ 停止执行

问题 老师，关于PASApipeline配置的问题

...onnect('database=wjsy11;host=localhost','shehb',...) failed: Access denied for user 'shehb'@'localhost' (using password: YES) at /ldata/xiongmei/ceshi/PASApipeline.v2.4.1/PerlLib/DB_connect.pm line 72. Cannot connect to wjsy11: Access denied for user 'shehb'@'localhost' (using password: YES) at /ld...

文章 LENS:人的基因相互作用分析在线工具

... compared against connectivity of randomly selected genes. Sources of data for the network generation are direct (biophysical) interactions from HPRD and BioGRID. Genome-wide Association Studies (GWAS) data are obtained from NHGRI's Gwas Catalog. Pathways are obtained from Reactome, drugs from DrugB...

问题 pip is configured with locations that require TLS/SSL, however the ssl module in Python is not available

python 编译之后报错： pip is configured with locations that require TLS/SSL, however the ssl module in Python is not available

问题 GWAS分析绘制进化树遇到下面问题是什么意思，请问怎么解决？

...-n fasttree WARNING: ignoring environment value of R_HOME --> Q&A for bioinformatics, please visit the website: https://www.omicsclass.com/ --> R beginners ? I suggest your  learning  R language: https://study.omicsclass.com/index Registered S3 methods overwritten by 'treeio':   me...

文章 R语言is.null()函数

...都没有，变量为空。     判断向量是否空值的函数：is.null() 2. R语言中，NA代表位置上的值为空。     判断向量中的元素是否缺失值：is.na() 示例： $var_name=NULL;if (is.null($var_name)){print "变量var_name为NULL";}else{print "变量var_name...

文章 biolinux安装matplotlib时报错

...   Running setup.py (path:/tmp/pip_build_root/tornado/setup.py) egg_info for package tornado     Traceback (most recent call last):       File "<string>", line 17, in <module>       File "/tmp/pip_build_root/tornado/setup.py", line 146, in <module>         raise I...

问题 单细胞测序数据差异基因KEGG富集分析

...ction (classes, fdef, mtable)  :    unable to find an inherited method for function ‘dotplot’ for signature ‘"NULL"’ Calls: dotplot -> <Anonymous> Execution halted 想请教下老师问题在哪？应该怎么解决？因为GO分析就正常分析，没有报错，KEGG富集...

文章 perl输出基因的位置信息按照基因所在染色体，和位置信息排序

...}close(IN);#多层排序，先按染色体排序，再按基因位置排序for my$id(sort {$gene_region{$a}->[0] cmp $gene_region{$b}->[0] or $gene_region{$a}->[1] <=> $gene_region{$b}->[1] } keys %gene_region){print OUT "$id\t".join("\t",(@{$gene_region{$id}},sort @{$Gene2mRNA{$i...

问题 Bioconductor包安装时出现警告，导致最后出来的图片部分缺失

...g/biocLite.R") Bioconductor version 3.2 (BiocInstaller 1.20.3), ?biocLite for help A new version of Bioconductor is available after installing the most recent   version of R; see http://bioconductor.org/install > biocLite(c("genefilter","ballgown","edgeR")) BioC_mirror: https://bioconductor...

文章 linux命令之AWK

...x 27 0 37 0 47 root 57 /root 6 数组netstat -anp|awk 'NR!=1{a[$6]++} END{for (i in a) print i,"\t",a[i]}'netstat -anp|awk 'NR!=1{a[$6]++} END{for (i in a) printf "%-20s %-10s %-5s \n", i,"\t",a[i]}'9523                               1     9929                         ...

文章 R 检测是否有-Inf/Inf NA NaN

...的情况 影响计算，检查数据中是否出现这种情况 可以用 is.na 或者is.nan、以及is.finite()或者is.infinite() 进行判断。 数据Data > Data[1]    1    2    3   NA -Inf  Inf    4    5  NaN 例如： is.na 可以判断是否缺失NA 或...

文章 GenePred格式

...g chrom: "Chromosome name" //染色体名称 char[1] strand: "+ or - for strand" //正负链信息 uint txStart: "Transcription start position" //转录起始位点 uint txEnd: "Transcription end position" //转录终止位点 uint cdsStart: "Coding region start" //编码区起始位...

问题 基因组注释Braker里面的报错

...   --softmasking    --bam=rnaseq.bam    --cores=$threads    --useexisting      --gff3 --skip_fixing_broken_genes” 报错“# Mon Aug 12 20:10:06 2024: Log information is stored in file /work/work/xsyj/genome_annotation/03.Braker/braker/braker.log ERROR in file /share/work/biosoft/BRAKE...