python运行单细胞umap报错

python运行单细胞umap报错

> library(umap)

> library(reticulate)

> iris.data = iris[, grep("Sepal|Petal", colnames(iris))]

> iris.umap_learn = umap(iris.data, method="umap-learn")

Error: Python shared library not found, Python bindings not loaded.




解决办法:重新编译python  :  ./configure --enable-shared --prefix=/share/work/biosoft/python/Python-v3.8.12 --enable-optimizations

./configure --enable-shared --enable-optimizations  --with-openssl=/share/work/biosoft/openssl/openssl-v1.1.1n/  --prefix=/share/work/biosoft/python/Python-v3.8.12 LDFLAGS="-Wl,-rpath=/share/work/biosoft/python/Python-v3.8.12/lib/" LD_LIBRARY_PATH="/share/work/biosoft/python/Python-v3.8.12/lib/" CPPFLAGS="-I/share/work/biosoft/python/Python-v3.8.12/include  -I/share/work/biosoft/openssl/openssl-v1.1.1n/include/openssl"


https://community.rstudio.com/t/importing-python-packages-in-rstudio-using-reticulate/80140
  • 发表于 2022-03-21 14:20
  • 阅读 ( 1522 )
  • 分类:python

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