...enerates a metric known as latent time. I am having a very had time seeing the difference between latent time and standard pseudotime analysis (usually carried out by slingshot, monocle 3, or PAGA) and whether one ofthem is redundant or not.
cosmic70: the latest COSMIC database with somatic mutations from cancer andthe frequency of occurence in each subtypeof cancer. For more updated cosmic, see instructions below on how to make them.icgc21: International Cancer Genome Consortium version 21 mutations.nci60: NCI-60 human tumor cell lin...
...rence/best_practices
The debugging facility is helpful to figure out what's happening under the
hood
http://www.circos.ca/documentation/tutorials/configuration/debugging
If you're still stumped, get support in the Circos Google Group.
http://groups.google.com/...
...espectively, were subjected to GO analysis based on sequence alignment andthe results were used in GO enrichment analysis. In total, 261 (C. exilicauda) and 197 (M. martensii) CDSs were assigned with 1562 (C. exilicauda) and 1390 (M. martensii) GO terms of knownfunction. The percentages of CDSs wit...
...e [predict.time ...] Time point to draw the ROC curve [default 365 1095 1825] -c cut.score, --cut.score cut.score set cut score value to divide high and low risk groups ...
...DERATE or LOW impact).GENEGene name (usually HUGO)GENEIDGene ID)FEATUREThetypeof feature is in the next field (e.g. transcript, motif, miRNA, etc.)FEATUREIDTranscript ID (preferably using version number), Motif ID, miRNA, ChipSeq peak, Histone mark, depending on the annotation.BIOTYPEDescription o...
... -format => 'fasta');while ( my $seqobj = $in->next_seq() ) {
# the human read-able id ofthe sequence
my $id=$seqobj->id(); # string of sequence
my $seq=$seqobj->seq();
# a description ofthe sequence
my $desc=$seqobj->desc();
# one of 'dna','rna','protein' https://www.bi...
...message and exit
-i maffile, --maf maffile
input the maf file[required]
-m metadata, --meta metadata
input metadata file path[required]
-g group, --group group
input group id in metadata file to classification
...