找到约 15 条结果

问题 微生物多样性分析课程镜像ampliseq-q2运行出错:there is no package called ‘BiocManager’

...ncountered while running DADA2 in R (return code 1), please inspect stdout and stderr to learn more. Debug info has been saved to /tmp/qiime2-q2cli-err-u8wvbzh9.log 打开日志文件: Error in library(BiocManager, quietly = TRUE) : there is no package called ‘BiocManager’ Calls: .First...

文章 借助perl脚本进行文件整理 | 将按第一列信息整理的文件改成按照第二列信息整理

...有perl脚本如下:print "perl $0  <id_list> <out_file>\n" and die unless(@ARGV==2);open IN,"$ARGV[0]" or die "$!; can't open file $ARGV[0]\n";open OUT,">$ARGV[1]" or die "$!; can't open file $ARGV[1]\n";my%id;my%hash;while(<IN>){        chomp;        my@a=split(/\s/...

文章 微生物与环境因子,代谢物,功能等相关性分析linkET

...)mantel#绘制相关图qcorrplot(correlate(varechem, method = 'spearman'), type = 'upper', diag = FALSE) +  #环境变量矩阵计算 Spearman 相关系数  geom_square() +  #绘制 Spearman 相关系数热图  geom_mark(sep = '\n', size = 2.5, sig.thres = 0.05) +  #显示 Spearman 相关系数...

文章 gsea-msigdb 数据下载

...集) C2 集合分为以下两个子集:化学与遗传扰动(Chemical and genetic perturbations, CGP)和经典通路(Canonical pathway, CP)。 CGP:化学与遗传扰动 CGP 子集的大部分数据来源于生物医学文献的整理工作。通过微阵列和测序研究,已鉴定出许...

文章 R语言统计数据范围并用ggplot2绘制柱状图

...ad(x,-1), tail(x,-1), sep="-")  ran[length(ran)]=">100"  ran  }# use the base hist() function to calculate BINs  ,超过100的数值归类到一起;data[data>100]=101MassStat <- with(hist(data, breaks=seq(0, 110, by = 10), plot=FALSE),                 data.frame(N=c...

文章 TCGA的ENSEMBL编号转换成gene symbol

...NAME"), OrgDb="org.Hs.eg.db") 'select()' returned 1:1 mapping between keys and columns # 查看转换的结果 > gene_ids ENSEMBL SYMBOL GENENAME 1 ENSG00000000971 CFH complement factor H 2 ENSG00000001084 ...

文章 NCBI下载物种叶绿体或线粒体基因组fasta,gff3,gtf,gb文件等

...为例,在斑胸草雀的参考基因组染色体详细表单中定位到Type列为MT的染色体(线粒体基因组),记下对应的RefSeq(Scaffold序列号)NC_007897.1                                                     (太长了,省略中间部分)    ...

文章 IF=6.68| HCC肝癌单细胞数据挖掘实践

...现,有些亚类细胞只在肝癌细胞中出现(clusters 8, 13, 16, and 17),其Marker基因为:HCC markers (GPC3, CD24, and MDK)。进一步通过拟时序分析这4个亚类细胞(clusters 8, 13, 16, and 17),得到4个cluster,其中cluster 0是最初始细胞亚类,发现PGLS...

文章 igraph 报错: libglpk.so.36: cannot open shared object file: No such file or directory

** demo ** inst ** byte-compile and prepare package for lazy loading ^A** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Error: package or namespace load failed fo...

问题 map bwa出错

...SQ line "VBZB010" with no LN: tag samtools view: failed to add PG line to the header 但grep   .fa文件后。 1到>29 dna:primary_assembly primary_assembly:LU_Bosgru_v3.0:29:1:46153303:1 REF >X dna:primary_assembly primary_assembly:LU_Bosgru_v3.0:X:1:136336377:1 REF >Y dna:primary_a...

文章 PBS 命令

...令—用于队列管理          qmgr -c "create queue batch queue_type=execution"          qmgr -c "set queue batch started=true"          qmgr -c "set queue batch enabled=true"          qmgr -c "set queue batch resources_default.nodes=1"          qmgr -c "set queue b...

问题 问题:"不能为虚拟电脑 Bio-Linux-8.0.7 打开一个新任务",已经按照提示看了自己的虚拟化设置是打开的,但还是下面的结果,求解答!

不能为虚拟电脑 Bio-Linux-8.0.7 打开一个新任务. The virtual machine 'Bio-Linux-8.0.7' has terminated unexpectedly during startup with exit code 1 (0x1). More details may be available in 'D:\软件安装包\VM\Bio-Linux-8.0.7\Logs\VBoxHardening.log'. 返回 代码: E_FAIL (0x80004005)...

文章 docker容器下mysql数据库还原与备份

...delete" == "ON" -a "$backup_location" != "" ];then`find $backup_location/ -type f -mtime +$expire_days | xargs rm -rf`echo -e "\033[32m ------------------- MySQL数据库已备份 $expire_days天前的备份已删除---------------- \033[0m" #greenfi 复制代码 2、执行定时计划,每天...

文章 单细胞转录组数据挖掘流程记录-LUAD(GSE131907)

...:meta.tsv SamplePatient_idTissueHistologySmokingPathologyEGFR_MUTEGFR_TypeStagesStages_StatusLUNG_N01P0001nLungADCNeverMDWTWTIALowLUNG_N06P0006nLungADCExMDNANAIALowLUNG_N08P0008nLungADCNeverMDL858RMUTIBLowLUNG_N09P0009nLungADCExPDWTWTIIALowLUNG_N18P0018nLungADCExMDdel19MUTIALowLUNG_N19P0019nLungA...

文章 IF=4.3 | 秋茄树SOS1基因家族分析

...MC Plant Biology》发表了一篇题为“SOS1 gene family in mangrove (Kandelia obovata): Genome-wide identification, characterization, and expression analyses under salt and copper stress”的SOS1基因家族分析文章。” SOS(salt overly sensitive)是协调耐盐相关的信号通路...