找到约 15 条结果

文章 R语言统计数据范围并用ggplot2绘制柱状图

...设置了x轴刻度标签倾斜; library(reshape2) local({r <- getOption("repos") ;r["CRAN"] <- "http://mirrors.tuna.tsinghua.edu.cn/CRAN/" ;options(repos=r)}) library(ggplot2) library(cowplot) library(RColorBrewer) pairjoin <- function(x){   ran=paste(head(x,-1), tail(x,-1),...

文章 shuf 随机抽取txt文件的行到新文件 linux命令

...instead of standard output      --random-source=FILE  get random bytes from FILE  -r, --repeat              output lines can be repeated  -z, --zero-terminated     line delimiter is NUL, not newline      --help显示此帮助信息并退出

文章 R 安装github包报错:

Using github PAT from envvar GITHUB_PAT. Use `gitcreds::gitcreds_set()` and unset GITHUB_PAT in .Renviron (or elsewhere) if you want to use the more secure git credential store instead. Error: Failed to install 'unknown package' from GitHub:   HTTP error 401.   Bad credentials   Rate limit ...

问题 群体遗传学GWAS课程docker很多命令无法运行

...rFilter.vcf.gz -SubPop popid.txt -MaxDist 500 -OutStat ld.stat the Number of subPop samples[found in VCF] is 0 sub Group Population szie is too small, SubGroup sample size: 0 ##begin pair-wise R^2 cal. after filter Remain SNP Number :     0 #% number bin is        1 1%......-->100%......

问题 R脚本画相关性散点图时报错

...ired = T,                    help = "Input contains two columns of data for calculating the correlation[required]",metavar = "meta") test5$add_argument("-n","--name",type = "character",default = "IRPS",                    help = "Specifies the column name of the column[optiona...

问题 Failed to load R0 module F:\/VMMR0.r0: The path is not clean of leading double slashes: 'F:\/VMMR0.r0' (VERR_SUPLIB_PATH_NOT_CLEAN). 代码: E_FAIL (0x80004005) 组件: ConsoleWrap 界面: IConsole {872da645-4a9b-1727-bee2-5585105b9eed}

不能为虚拟电脑bio—Linux—8.0.7打开一个新任务

文章 GATK Hard-filter 过滤变异结果推荐阈值

...t; -0.8FS > 200.0SOR > 10.0 查看GATK4原始网页:https://software.broadinstitute.org/gatk/documentation/article?id=11097该阈值选择来自于GATK4官网的推荐,阈值依据于比较真 vs. 假 snp的特征值(annotation values)统计分布 One of the most helpful ways ...

问题 NGS数据分析时,使用ANNOVAR的table_annovar.pl报错。

..../bin/M5-31.avinput.exonic_variant_functionNOTICE: Reading gene annotation from HPdb/HP_refGene.txt ... Done with 1609 transcripts (including 43 without coding sequence annotation) for 1609 unique genesNOTICE: Processing next batch with 6421 unique variants in 6421 input linesNOTICE: Reading FASTA s...

文章 Perl 变量命名规则

...是在末端加上介词,比如。 my %title_of;my %ISBN_for;my @sales_from; 这种写法会使后面的代码可读性极好。 while (my $month = prompt -menu => $MONTH_NAMES) {for my $book (@catalog) {print "$ISBN_for{$book} $title_of{$book}: $sales_from[$month]\n"; }} 对于子程序和...

文章 STAR构建基因组索引报错

报错提示: Fatal LIMIT error: the number of junctions to be inserted on the fly =1412348 is larger than the limitSjdbInsertNsj=1000000Fatal LIMIT error: the number of junctions to be inserted on the fly =1412348 is larger than the limitSjdbInsertNsj=1000000SOLUTION: re-run with at least --limi...

文章 基因组版本 Primary 和 Alternate的区别

Primary assembly: a complete assembly with long stretches of phased blocks. The concept has been used by GRC. BAC-to-BAC assemblies can all be regarded as primary assemblies. Falcon-unzip is perhaps the first to produce such assemblies for whole-genome shotgun data.Alternate assembly: an incomplete...

问题 安装 velocyto 报错

... named 'numpy'       [end of output]   note: This error originates from a subprocess, and is likely not a problem with pip. error: subprocess-exited-with-error × Getting requirements to build editable did not run successfully. │ exit code: 1 ╰─> See above for output. note:...

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文章 awk基本参数解释

...操作。 awk读取单个文件时的基本语法格式是 awk 'BEGIN{OFS=FS="\t"}{print $0, $1;}' filename 读取多个文件时的语法是 awk 'BEGIN{OFS=FS="\t"}ARGIND==1{print $0, $1;}ARGIND==2{}' file1 file2 awk后面的命令部分是用引号括起来的,可以单引号,可以...

问题 提供感兴趣基因进行分支分析时,出现Error in simple_vs_index(x, rlang::eval_tidy(args[[1]]), na_ok) : Unknown vertex selected报错

...t.genes.color.group mycelltype 出现以下报错 Error in simple_vs_index(x, rlang::eval_tidy(args[[1]]), na_ok) :   Unknown vertex selected Calls: BEAM ... buildBranchCellDataSet -> [ -> [.igraph.vs -> simple_vs_index Execution halted