[root@4d714c8732b0  14:14:49 /work/my_gwas2/04.LDdecay]# PopLDdecay -InVCF  ../00.filter/all.varFilter.vcf.gz -SubPop popid.txt -MaxDist 500 -OutStat ld.stat

the Number of subPop samples[found in VCF] is 0

sub Group Population szie is too small, SubGroup sample size: 0

##begin pair-wise R^2 cal. after filter Remain SNP Number :     0

#% number bin is        1

1%......-->100%.......          ALL done

Used [perl  ../bin/Plot_XX.pl ] to Plot the LDdecay

只能产生很小的结果文件，前面也有一些命令运行不了