...e responsiveness; TC-rich repeats,
cis-acting element involved in defense and stress responsiveness; ABRE, cis-acting element involved in the
abscisic acid responsiveness; circadian, cis-acting regulatory element involved in circadian control; MBS,
MYB binding site involved in drought-inducibilit...
...答。
Point 6: - Line 600: DEGs were determined using p-value < 0.05 and fold change ≥ 1.5. What is the rationale behind using pvalues instead of adjusted pvalues/FDR. Multiple testing correction is a very crucial aspect of RNA-Seq data analysis since there are thousands of genes being tested...
...ad2
17205178 + 0 properly paired (44.94% : N/A)
18888798 + 0 with itself and mate mapped
1437966 + 0 singletons (3.76% : N/A)
1344176 + 0 with mate mapped to a different chr
923040 + 0 with mate mapped to a different chr (mapQ>=5)
36840465 + 0 in total (QC-passed reads + QC-failed reads)3...
...ssing overall read quality, setting a per-read quality flag (Read_Filter), and removing base quality scores from the file. In the resulting files, all reads have a Read_Filter flag with value pass or reject. Importantly, it is still possible to produce fastq formatted files from SRA Lite format usin...
...own in gel conditions, 2 wilde type grown in non-compacted soil conditions and 2 wild type grown in compacted soil conditions. scRNA-seq of 2 kitaake grown in gel conditions, 2 Kitaake grown in non-compacted soil conditions.
单细胞转录组揭示玉米根的热胁迫反应机制
Wang, ...
...e node branch, or outside the tree#lines starting with a hash are comments and ignored during parsing#=================================================================## MANDATORY SETTINGS ##=========================================...
Each circle of the MEGAN tree represents a taxon in the NCBI taxonomy and is labeled by its name and the number of reads that were assigned to the taxon and not to a subtaxon. The size of the circle is scaled logarithmically to represent the number of reads.
图中圆圈大小代表该物...
...alysis
optional arguments:
-h, --help show this help message and exit
-i data, --data data input data file path[required]
-t time, --time time set suvival time column name [required]
-e event, --event event
set event column name [required]
-v variate [...
...ource* package ‘units’ ...** package ‘units’ successfully unpacked and MD5 sums checked** using staged installationconfigure: units: 0.8-2checking whether the C++ compiler works... yeschecking for C++ compiler default output file name... a.outchecking for suffix of executables...checking whe...