7 The following object is masked from ‘package:VennDiagram’: 8 9 ellipse 10 11 Error in dyn.load(file, DLLpath = DLLpath, ...) : 12 unable to load shared object '/share/work/biosoft/R/R-v4.2.0/lib64/R/library/units/libs/units.so': ...
...采用如下的代码实现。
#!/usr/bin/perl -w
use strict;
my $biotype_file = shift @ARGV;
my $gtf = shift @ARGV;
my $biotype = shift @ARGV;
my %biotype_list;
open my $fh1, $biotype_file or die;
while (<$fh1>) {
chomp;
my @array = split /\t/, $_;
if($array[2]eq $biotype){
...
...ction2 二代组装：spades assemblies3 混合组装：assembling contigs and long reads with miniasm4 比对：aligning reads5 搭桥：building long read bridges6 抛光：polishing assembly with pilon
组装结果
参考：https://www.jianshu.com/p/6ac7762a8f3a
...后续进行网络网络设置，例如：
miRNA
Target
pathway
type
ath-miR156a-3p
AT1G65440
A
A
ath-miR156a-3p
AT3G06340
A
A
ath-miR156a-3p
AT5G58220
A
A
ath-miR156a-5p
AT1G08590
A
A
ath-miR156a-5p
AT1G19800
A
A
ath-miR156a-5p
AT1G72700
A
A
ath-m...
...e/work/perl/perl-v5.14.2 -Accflags='-fPIC'
make
make install
Note that in the command above, -fPIC is needed for x86_64 system, and -Duseithreads are highly recommended to enable threading functionality in Perl (though not used in PennCNV per se).
然后再把这个版本的perl添加到PATH...
...h_from_gtf.py", line 51, in <module> if kvs['gene_id'] in geneL and kvs['transcript_id'] in geneL[kvs['gene_id']]:KeyError: 'gene_id'gtf如下：请教老师如何解决这个问题，不胜感激！
hecking for strings.h... yeschecking for sys/stat.h... yeschecking for sys/types.h... yeschecking for unistd.h... yeschecking for gdal.h... yeschecking GDAL: linking with --libs only... yeschecking GDAL: /usr/share/gdal/pcs.csv readable... nochecking GDAL: checking whether PROJ is available for link...