...., Bu, Z., Hu, X., Ji, J., & Zhang, Z. (2021). Pan-cancer single-cell landscape of tumor-infiltrating T cells. Science (New York, N.Y.), 374(6574), abe6474. https://doi.org/10.1126/science.abe6474 （张泽民课题组描绘泛癌T细胞全景图）
Yang, Y., Chen, X., Pan, J., Ning, H., Z...
...enomics Database
对于群体数据来说，多样本同时时行 SNP Calling 的准确度要优于单个样本的 SNP Calling.
GATK3 的多样本 SNP Calling 功能是 CombineGVCFs，GATK4 新出了 GenomicsDBImport功能，官网建议它适合1000个样本以上的 SNP Calling，但是它的另...
...CN99 Corp.
http://mirrors.cn99.com/centos/
Dalian Neusoft University of Information
http://mirrors.neusoft.edu.cn/centos/
HUAWEI CLOUD
http://mirrors.huaweicloud.com/centos/
Lanzhou University Open Source Society
http://mirror.lzu.edu.cn/centos/
Nanjing University
http://mirrors.nju.ed...
...2 on chrB6+, this line is on chrB6-, all group members must be on same seq and strand
RUN CMD: retrieve_seq_from_fasta.pl --format refGene --seqfile elepant_grass_genome.fa unknown_refGene.txt --out unknown_refGeneMrna.fa
NOTICE: Reading region file unknown_refGene.txt ... Done with 4143 regions...
...，最终：1,140 patients for analysis, including 337 patients from TCGA and 803 patients from GEO。糖酵解相关基因集：从Molecular Signatures Database v4.0数据库中筛选与糖酵解相关的基因集5个：BIOCARTA_GLYCOLYSIS_PATHWAY, GO_GLYCOLYTIC_PROCESS,HALLMARK_GLYCOLYSIS,KEGG_GLY...
...误：
=======================================================A Big Warniing====================================================== IDs that you used as input do NOT present in gff/gtf file. Examples of valid IDs is showed as bellowedGuess FileType is:GTFtranscript:AT1G03987.1tr...
...04optional arguments: -h, --help show this help message and exit -a all.deg.file, --all.deg.file all.deg.file all diff express gene list file,must include log2FC column, required -g gmtfile, --gmtfile gmtfil...
...令就不报错，这是怎么回事？
sh: -I: command not found
warning, cmd: -I $workdir/3.map/result/${i}.sorted.dedup.bam \ failed with ret: 32512, going to retry.
sh: -c: line 0: unexpected EOF while looking for matching `"'
sh: -c: line 1: syntax error: unexpected end of file
sh...