...ation to run. Can be uwot:Runs umap via the uwot R package; uwot-learn:Runs umap via the uwot R package and return the learned umap model;umap- learn:Run the Seurat wrapper ofthe python umap-lea...
...于Artemis的DN序列可视化比较工具ampliconnoise1bl-0Programs for the removal of noise from 454 sequenced PCR amplicons去除454测序PCR扩增噪音序列arb1:1bl1-3Graphical sequence and data analysis tools.图形化序列分析工具archaeopteryx0.972.beta9M-3A phylogenetic tree viewer and...
...group_by_cluster参数，以下是官方说明
If group_by_cluster=FALSE, the dendrogram on the left is a hierarchical clustering of all non-reference cells. The first color column indicates the subdivisions ofthe dendrogram by cutting it in k_obs_groups groups. The second color column indicates t...
...smu.top/treedata-book/
If you use the ggtree package suite in published research, please cite
the appropriate paper(s):
Guangchuang Yu, David Smith, Huachen Zhu, Yi Guan, Tommy Tsan-Yuk Lam.
ggtree: an R package for visualization and annotation of phylogenetic
trees with their covariates an...
...O_data GO_DATA
input a GO enrichment analysis data,the data with
columns for 'category','ID','term',adjusted
p-value('adj_pval') and 'genes'[required]
-d DEG_DATA, --deg_data DEG_DATA
input the result o...
...件的时候遇到以上的问题，请问怎么解决。
Chains A, B ofthe uploaded template do not start with residue no. 1. Will be renumbered.Chain A ofthe uploaded template contains multiple unordered residues, starting at residue 623. Residue numbers must occur in ascending order. That way,...
The sequence reads were processed by Stacks version 2.6[1].We used the process_radtags function to clean the tags, discarding reads of low quality (-q), removing reads with uncalled bases (-c) and rescuing barcodes and radtags (-r). SNP calling for each individual was done using the program denov...
...stoma_floridae.protein_coding.gff3
We will discard all features that have the attribute gene_biotype with the value ne protein_coding.
Can not open Branchiostoma_floridae.gff.agat.log for printing: No such file or directoryprint() on closed filehandle $log at /share/work/biosoft/perl/perl-5.22.1/l...
...., Wang, X., Ren, X., Bei, J. X., Hu, X., Bu, Z., Ji, J., & Zhang, Z. (2021). A pan-cancer single-cell transcriptional atlas of tumor infiltrating myeloid cells. Cell, 184(3), 792–809.e23. https://doi.org/10.1016/j.cell.2021.01.010
Zheng, L., Qin, S., Si, W., Wang, A., Xing, B., Gao, R., ...