ERROR net.maizegenetics.plugindef.AbstractPlugin - Problem loading file: /home/liuyunxiu/GWAS/intersection_data/sorted_shared.corrected.Q.
Error: Unrecognized format for a phenotype.
[pool-2-thread-2] ERROR net.maizegenetics.plugindef.AbstractPlugin - Problem loading file: /home/liuyunxiu/GWAS/...
...nAnalysis
from Bio import SeqIO
# 指定蛋白序列的fasta文件
protein_file = "protein.fasta"
# 遍历每一条蛋白序列，计算等电点
for seq_record in SeqIO.parse(protein_file, "fasta"):
p = ProteinAnalysis(str(seq_record.seq))
# 等电点的计算函数是：isoelectric_point
...
ERROR net.maizegenetics.plugindef.AbstractPlugin - Problem loading file: /home/liuyunxiu/GWAS/intersection_data/sorted_shared.corrected.Q.
Error: Unrecognized format for a phenotype.
[pool-2-thread-2] ERROR net.maizegenetics.plugindef.AbstractPlugin - Problem loading file: /home/liuyunxiu/GWAS/...
...#########################
http://genomicsclass.github.io/book/pages/intro_to_batch_effects.html
One often overlooked complication with high-throughput studies is batch effects, which occur because measurements are affected by laboratory conditions, reagent lots, and personnel differences. This bec...
...状数据，然后计算抗性指数：
The response of the genotypes to salt stress was expressed using the stress susceptibility index (SSI) calculated according to Fischer and Maurer39 using the following formula: SSI = (1 − Ys/Yp)/D, where Ys = mean performance of a genotype under stress...
...较模糊了，官方的定义是e-value：the number of hits you expect to see by chance/false positive .
对于定义里面的“by chance”，也就是随机情况下指的是什么意思不是很了解，随后查阅了一下文献，是这样解释的：
by chance means：
①real but non-h...