找到约 15 条结果

文章 “特朗普”成为科研新热点,100多篇CNS都有他......

...ure在线发表了一篇研究报告,标题是——Trump’s plan would make government stupid 翻译一下:特朗普的计划会让政府变得愚蠢 这位作者可是地地道道的美国人,不得不说,他们“研究”起自己的大Boss可真是毫不留情面, 事实上,...

文章 借助perl脚本进行文件整理 | 将按第一列信息整理的文件改成按照第二列信息整理

... Cyellow  B有perl脚本如下:print "perl $0  <id_list> <out_file>\n" and die unless(@ARGV==2);open IN,"$ARGV[0]" or die "$!; can't open file $ARGV[0]\n";open OUT,">$ARGV[1]" or die "$!; can't open file $ARGV[1]\n";my%id;my%hash;while(<IN>){        chomp;        my@...

问题 请教老师,Gemma分析时的报错问题?

[root@iZ2e]# ./gemma-0.98.5-linux-static-AMD64 -bfile c -k output/result1.sXX.txt -lmm 1 -p p.txt -c c.txt GEMMA 0.98.5 (2021-08-25) by Xiang Zhou, Pjotr Prins and team (C) 2012-2021 ERROR: Enforce failed for file_kin output/result1.sXX.txt: open file in src/param.cpp at line 934 in CheckParam

文章 MA plot 绘图计算公式

...面) ############## Microarray data is often normalized within arrays to control for systematic biases in dye coupling and hybridization efficiencies, as well as other technical biases in the DNA probes and the print tip used to spot the array.[3] By minimizing these systematic variations, tru...

文章 食管癌 10X多样本(GSE145370)

...et -c "https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE145370&format=file" -O GSE145370_RAW.tar#解压tar xvf GSE145370_RAW.tar 准备map.txt 文件: #accession SampleID gender age pathological_stage tissue_type patient GSM4317409 S133A Male 60 IIIB T S133 GSM4317410 S134A Female 53 II...

文章 绘制venn图,2-7维

...数据列表,一列为一组ID data<-read.table("data.txt",header=T,check.names = F,stringsAsFactors = F,sep="\t",fill=T,na.string="") x<-as.list(data) x<-lapply(x,na.omit)

文章 遗传图绘制:

...utfile,ruler = F,lg.col = "lightblue1")## draw tickmarks at each cM from 0 to largest position of linkage groups to be drawnmaxpos <- floor(max(carrot$position))at.axis <- seq(0, maxpos)## put labels on ruler at every 10 cMaxlab <- vector()for (lab in 0:maxpos) {  if (!lab %% 10) {    ax...

文章 从tar压缩文件夹中仅提取某一个目标文件

...成不清楚的话,可以使用tar tvf指令进行查看: tar tvf file.tar 比如我们需要从中提取某个MD5文件,那么执行如下指令: tar xvf 1.tar ./MD5/file.md5

问题 用deseq_analysis.r分析差异表达分析时报如下的错误

[1] "abstract_factors is start" Error in scan(file = file, what = what, sep = sep, quote = quote, dec = dec,  :   line 2 did not have 3 elements Calls: abstract_factors -> read.table -> scan Execution halted

文章 linux命令之cp

...果没有文件复制的权限,则系统会显示出错信息。将文件file复制到目录/usr/men/tmp下,并改名为file1cp file /usr/men/tmp/file1将目录/usr/men下的所有文件及其子目录复制到目录/usr/zh中cp -r /usr/men /usr/zh交互式地将目录/usr/men中的以m打头的...

问题 关于使用nohup vcftools过滤vcf文件的问题

...不一样: 1)不用nohup得到的normal.vcf.gz文件共120218行 ##fileformat=VCFv4.2##ALT=<ID=NON_REF,Description="Represents any possible alternative allele at this location">##FILTER=<ID=LowQual,Description="Low quality">##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Alle...

问题 hmm搜索失败,已检查hmm文件,并重新建hmm模型,还是报错。

自建hmm模型,检查了wrky.hmm与自建xx.hmm 文件(图一、图二)。 在hmmsearch 时:hmmsearch --domtblout xx_hmm_out.txt --cut_tc xx.hmm xx.pep.all.fa 报错:Error: bad file format in HMM file NLRP.hmm 图一 图二 图三

问题 hmm搜索失败,已检查hmm文件,并重新建hmm模型,还是报错。

自建hmm模型,检查了wrky.hmm与自建xx.hmm 文件(图一、图二)。 在hmmsearch 时:hmmsearch --domtblout xx_hmm_out.txt --cut_tc xx.hmm xx.pep.all.fa报错:Error: bad file format in HMM file NLRP.hmm图一图二图三

问题 用W11安装docker后,docker search omicsclass出错

...3 container via direct connection because  has no HTTPS proxy: connecting to index.docker.io:443: dial tcp 108.160.172.1:443: connectex: A connection attempt failed because the connected party did not properly respond after a period of time, or established connection failed because connected host h...

文章 SURVIVOR工具进行结构变异结果文件的格式转换(bedtovcf)

...通过“bedtovcf”将bed文件转换成vcf格式: ./SURVIVOR bedtovcf file.bed DEL file.del.vcf #参数“DEL”指定了输入的结构变异类型,可选的有,INS,DEL,BND,INV,DUP几种类型 生成的VCF文件: