SNP分析过程中，由于基因组序列长度过长，会导致GATK软件报错。如下所以：
Exception in thread "main" htsjdk.samtools.SAMException: Exception when processing alignment for BAM index A00253:355:H75GLDSX2:2:1334:20989:8625 1/2 150b aligned read. at htsjdk.samtoo...
...址：http://www.shigatox.net/stec/cgi-bin/snpt
这个软件可以做的分析：
Indentify unique SNPs profiles and assign sequence types(MST);Calculate allele frequencies;Find informative SNPs;Calculate D (Index of the Discrininatory Ability);Find the set(s) of minimum SNPs;Output MST data file ...