用户 Shine and Meditation

用户 A AND B

问题 在用tassel对vcf进行sort时报的错，有哪位大佬知道怎么操作吗

...操作吗 ERROR net.maizegenetics.plugindef.ThreadedPluginListener - Out of Memory: SortGenotypeFilePlugin could not complete task: Current Max Heap Size: 29809 Mb Use -Xmx option in start_tassel.pl or start_tassel.bat to increase heap size. Included with tassel standalone zip.

文章 ERROR 1290 (HY000): The MySQL server is running with the --skip-grant-tables 解决方法

...gt;ALTER USER 'root'@'localhost' IDENTIFIED BY '123456'ERROR 1290 (HY000): The MySQL server is running with the --skip-grant-tables option so it cannot execute this statement 这个时候只需要刷新一下权限即可： flush privileges; 再次修改密码尝试： >ALTER USER 'root'@...

问题 基因家族分析circos时显示基因基因数目超出最大值怎么办

...ks from file       /home/manager/gene_family/circos/genome.txt   but the maximum is currently set at [25000]. To increase this number change   max_links in etc/housekeeping.conf. Keep in mind that drawing that many links   may create an image that is too busy and uninterpretable. 请...

问题 植物线粒体组装unicycler软件里的spades报错

...      (kmer_coverage_model.cpp   : 218)   Too many erroneous kmers, the estimates might be unreliable  * 0:07:10.518  1785M / 18G   WARN    General                 (kmer_coverage_model.cpp   : 327)   Valley value was estimated improperly, reset to 3  * 0:07:10.523  1785...

问题 docker-GSDS网站出错：Request-URI Too Long The requested URL's length exceeds the capacity limit for this server.

Request-URI Too Long The requested URL's length exceeds the capacity limit for this server.

用户 No One And You

文章 外源插入流程报错运行不了

...128: BiopythonWarning: You may be importing Biopython from inside the source tree. This is bad practice and might lead to downstream issues. In particular, you might encounter ImportErrors due to missing compiled C extensions. We recommend that you try running...

问题 TCGA数据下载后保存出错

...g data for project TCGA-STAD GDCdownload will download 407 files. A total of 105.663384 MB Downloading as: Sun_Aug__5_19_35_20_2018.tar.gz Downloading: 110 MB     >  > # 保存结果，方便后面使用 > data <- GDCprepare(query = query,  +                       ...

话题 fpkm_and_plot.R

文章 docker 报错 error during connect: In the default daemon configuration on Windows,

error during connect: In the default daemon configuration on Windows, the docker client must be run with elevated privileges to connect.: Get "http://%2F%2F.%2Fpipe%2Fdocker_engine/v1.24/images/search?limit=25&term=omicsclass": open //./pipe/docker_engine: The system cannot find the file specifi...

文章 python 读取kegg绘图配置文件中的kgml文件内容

...ot.nodeName=='pathway':    for i in root.childNodes:        if i.nodeType==1:            if i.nodeName=='entry':                link=i.getAttribute('link')                 #print link+'\n'             for g in i.childNodes:                if g.nodeName=='gra...

文章 Vennerable绘制维恩图颜色比较丑如何自己设置颜色

...ry(Vennerable) data(StemCell) w <- Venn(Sets=StemCell[1:2]) plot(w, type="squares") 自行修改颜色，当然type还有"circles","squares","triangles","ellipses","AWFE","ChowRuskey","AWFE".类型包括圆形，椭圆形等，这里绘制的是方形的维恩图，修改颜色代码如...

文章 IF=5 | 健康犬的肠道微生物组和代谢组对膳食纤维的反应

“ 2024年12月《mSystems》发表了一篇题为“Response of the gut microbiome and metabolome to dietary fiber in healthy dogs”的文章。” 这项研究探讨了膳食纤维与肠道微生物群及其功能之间的相互作用。通过分析健康犬只摄入不同纤维来源和数量...