找到约 15 条结果

问题 使用plink做pca分析时报错

...' on line 30616892 of .vcf file.(This is disallowed for humans.  Check if the problem is with your data, or ifyou forgot to define a different chromosome set with e.g. --chr-set.) 使用的命令如下: plink --vcf  $workdir/2022_clean.vcf.gz --pca 10 --out  plink_pca   \    --allow-extr...

问题 老师我想问一下,MENA在analysis the network 报错的问题

... Carter T. Butts, University of California-IrvineFor citation information, type citation("sna").Type help(package="sna") to get started.Error in `rownames<-`(x, value) :length of 'dimnames' [1] not equal to array extentCalls: row.names<- -> row.names<-.default -> rownames<-Executio...

文章 合并不同sample的vcf文件,通过bcftools

通过GATK calling出来的SNP如果使用UnifiedGenotype获得的SNP文件是分sample的,但是如果使用vcftools或者ANGSD则需要Vcf文件是multi-sample的,这里就需要我们将不同samples的文件进行合并,可以通过vcftools的perl模块进行,但是这种方式对perl的...

文章 组装好的基因组通过agp文件得到contig序列

...ibao/jcvi/wiki/ALLMAPS%3A-How-to-lift-over-gene-annotations But, you want the reverse mapping here so we'd need to swap the AGP file. python -m jcvi.formats.agp swap assembly.agp This generates a new AGP assembly.swapped.agp. You'll see that it basically swaps the components/objects from the or...

问题 docker toolbox启动报错

...) Check network to re-create if needed... (default) Windows might ask for the permission to configure a dhcp server. Sometimes, such confirmation window is minimized in the taskbar. (default) Waiting for an IP... Machine "default" was started. Waiting for SSH to be available... Detecting the pr...

问题 利用KaKs_Calculator2.0计算两个基因的kaks时出现:Error.

The size of two sequences in 'EVM0055308&EVM0007023' is not equal. 出现问题后也按照课堂上和视频课程中的方法进行了解决,也检查了ATG,序列是否为3的倍数等问题,均符合要求,不知道是什么问题造成的,

问题 群体结构分析时,执行代码报错

...vironment value of R_HOME --> Q&A for bioinformatics, please visit the website: https://www.omicsclass.com/ --> R beginners ? I suggest your  learning  R language: https://study.omicsclass.com/index pophelper v2.3.1 ready. Error in plotQ(qlist, imgoutput = "join", returnplot = T, exp...

文章 如何用R语言绘制进化树+热图

... required.", 'height' , 'H', 1, "integer","the height of graph ,unit is inches [optional, default: 8]", 'width' , 'W', 1, "integer","the width of graph ,unit is inches [optional, default: 6]", 'outdir', '...

文章 蛋白质的理化性质除了用Expasy网站还能用TBtools等分析

... 相对分子质量 (KDa)、等电点(PI)、负电荷残基(Total number of negatively charged residues)、正电荷残基(Total number of positively charged residues)、不稳定系数(Instability index)、总平均亲水性(Grand average of hydropathicity-简写GRAVY)、脂肪指数(Alipha...

文章 MutMap+和mutmap分析差异(BSA)

...tructed by replacing nucleotides in Nipponbare with those of Hitomebore at the 124,968 SNP positions identified between the two cultivars by alignment of 12.25 Gb of Illumina Hitomebore short reads to the Nipponbare reference genome要使用mutmap的定位方法:1.一般为隐性突变,最好是...

问题 做有参转录组分析,在进行基因表达定量的时候,出现如下问题,请问老师这是什么原因呀

...Feature Yangtao2000001 does not contain a 'gene_id' attribute  [Exception type: ValueError, raised in count.py:53]

问题 gatk call SNP样品多采取方法2,报错如下是怎么回事啊

A USER ERROR has occurred: Argument emit-ref-confidence has a bad value: Can only be used in single sample mode currently. Use the --sample-name argument to run on a single sample out of a multi-sample BAM file

问题 基因家族分析时用大豆gff文件报错 killed

...想要进行“保留蛋白编码基因”出现报错“=> Version of the Bioperl GFF parser selected by AGAT: 3 gff3 reader error level1: No ID attribute found @ for the feature: 1    ena_assembly_gap        biological_region      2584646                               ...

文章 你不知道的微生物互作分析方法

... 参考文献: [1] Durrer A, Gumiere T, Taketani R G, et al. The drivers underlying biogeographical patterns of bacterial communities in soils under sugarcane cultivation[J]. Applied Soil Ecology, 2016, 110. [2] Faust K, Sathirapongsasuti J F, Izard J, et al. Microbial Co-occurrenc...

问题 Error in seq.default(grps[start] + 1, grps[start + 1] - 1) : 'from' must be of length 1此外: Warning messages: 1: In file(con, "r") : InternetOpenUrl失败:’不能连接到吊销服务器,或者未能获得最终响应。' 2: In readLines(...) : 读'http://bioconductor.org/config.yaml'时最后一行未遂

在rstudio中运行 BiocManager::install("TCGAbiolinks"),迟迟无法下载数据,并显示上方错误,请问怎么解决