找到约 15 条结果

文章 计算肿瘤纯度和免疫评分 R包总结

...terations in human cancer. Nat Biotechnol. 2012;30(5):413-21. [1] GSVA: The Gene Set Variation Analysis package for microarray and RNA-seq data  [2] Xue Y, Tong L, LiuAnwei Liu F, et al. Tumor‑infiltrating M2 macrophages driven by specific genomic alterations are associated with prognosis in...

文章 8.28接收-毛竹bHLH基因家族分析文章解读及原文献下载

...其中16个亚家族中(except 1,7, 13, 14, and 20)。 图注: a: The 137 PebHLH genes are clustered into 16 subfamilies. b: Comparison of bHLH family members from Moso bamboo, rice and Arabidopsis. Different colors represent the different species, and the percentage of each subfamily in e...

文章 甲基化水平计算

...位点+蓝色位点 的分母之和) 参考文献:‘Leveling’ the playing field for analyses of single-base resolution DNA methylomes

文章 ggplot2控制坐标轴截距交点位置(原点)

...ctor of length two giving multiplicative and additive expansion constants. These constants ensure that the data is placed some distance away from the axes. The defaults are c(0.05, 0) for continuous variables, and c(0, 0.6)for discrete variables.连续性和离散型都涉及,默认值不同,...

文章 circos改变某两条染色体之间的距离

...。在etc/image.generic.conf文件中,定义了参照的radius radius of inscribed circle in imageradius         = 1500p 所以我们在配置文件中定义的radius  = 0.80r, 实际等于0.8 * 1500 = 1200 像素。 染色体之间的间距通过spacing 这个block 进行定义,defau...

问题 老师我一个一个步骤进行,一个基因一个基因分析,是这个命令有问题才出现domain_final.bed只有一个基因,代码有问题么:grep -v '#' ZS11.v10.FAE1_hmmerOut.final.txt|awk 'BEGIN{OFS="\t"}$10==1 {print $1,$18,$19 }' >ZS11.v10.domain_final.bed,这是我刚刚使用的这步的代码,前一步产生的hmmerOut.final.txt文件还整常

如果代码没问题,只能手动筛选么,怎么保存成domain_final.bed格式呀

文章 施一公:如何提高英文的科研写作能力

...我生平第一次给《华盛顿邮报》和《巴尔的摩太阳报》(The Baltimore Sun)各写了一封信,评论报道的不公平。没想到两天后《巴尔的摩太阳报》居然原封不动的把我的信刊登在“读者来信”栏目,同事祝贺,我也洋洋得意。受到...

问题 16S Picrust2

...面的问题 问题: --> Q&A for bioinformatics, please visit the website: https://www.omicsclass.com/ --> R beginners ? I suggest your  learning  R language: https://study.omicsclass.com/index Failed to create bus connection: No such file or directory ── Attaching core tidy...

文章 MUMmer + SVMU : CNVs

...于 lastz 太慢,因此多样本 批量运行if [ -f lastz.cmds.sh ] ; then rm -f lastz.cmds.shfiif [ -f svmu.cmds.sh ] ; then rm -f svmu.cmds.shfi#批量产出命令for query in An1 C24 Cvi Eri Kyo Ler Sha;do    ln -s ../04.snp_indel/$query.delta .  echo "lastz ref.fa[multiple]  $query.fa[...

文章 NCBI、ENA高通量测序数据下载-fastq数据

...负责维护,隶属于美国国立卫生研究院(National Institutes of Health, NIH)。 ENA:https://www.ebi.ac.uk/ena/browser/home;欧洲核苷酸序列数据库(European Nucleotide Archive),由欧洲分子生物学研究室(European Molecular Biology Laboratory,EMBL)开发...

文章 GWAS分析哪个模型最优

...一个SNP正好位于W1基因上 4,559,799 bp。 注:Manhattan plots of -Log10 (P) vs. chromosomal position of SNP markers associated with flower color in soybean from eight models including Analysis of Variance (ANOVA) (A), General Linear Model (GLM) (B), Mixed Linear Model (MLM) (C), Compress...

问题 gzip: Phaseolus_vulgaris.PhaVulg1_0.45.gff3: Protocol error

文章 R语言数据筛选整理包dplyr 分类汇总

...es) SELECT filter() Filter (subset) rows. WHERE group_by() Group the data GROUP BY summarise() Summarise (or aggregate) data - arrange() Sort the data ORDER BY join() Joining data frames (tables) JOIN mutate() Creating New Variables COLUMN ALIAS dplyr中主要方...

文章 TCGA 临床随访信息follow up 各列介绍:

...sk_factorsbarretts_esophagus_goblet_cells_presentbmibody_surface_areacause_of_responsecd4_countcdc_hiv_risk_factorscomorbiditycomorbidity_method_of_diagnosisdays_to_adverse_eventdays_to_comorbiditydays_to_imagingdays_to_progressiondays_to_progression_freedays_to_recurrencediabetes_treatment_typedise...

文章 pfam上不去 打开后搜索没有反应

...想搜索的话是不行的: Please note: this site relies heavily on the use of javascript. Without a javascript-enabled browser, this site will not function correctly. Please enable javascript and reload the page, or switch to a different browser. 我们看到网页上提示JavaScript有问...