...例文件，放了所有样品的集合，但是跑出来是如下这样
the Number of subPop samples[found in VCF] is 0
sub Group Population szie is too small, SubGroup sample size: 0
##begin pair-wise R^2 cal. after filter Remain SNP Number : 0
#% number bin is 1
1%......--&...
...脚本中提到了，所生成的三种文件，其中 clip graph: This is the default graph. Stretches of sequence >10kb that were not aligned to the underlying SV/minigraph are removed. "Dangling" nodes (ie that don't have an edge on each side) that aren't on the reference path are also removed...
...NG SOMETHING NASTY!Someone could be eavesdropping on you right now (man-in-the-middle attack)!It is also possible that a host key has just been changed.The fingerprint for the ECDSA key sent by the remote host isSHA256:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.Please contact your system administrat...
具体问题提示为：java.lang.IllegalArgumentException: Sample Line68 has an inconsistent number of alleles. The first genotype is diploid, but the genotype at position Chr2:35902177 is haploid
1 warning messages: Use of uninitialized value $id in lc at /share/work/biosoft/perl/perl-5.22.1/lib/site_perl/5.22.1/AGAT/OmniscientI.pm line 1198, <$fh> line 3385475.
1 warning messages: Use of uninitialized value $id in lc at /share/work/biosoft/perl/perl-5.22.1/lib/site_perl/5.22.1/AGAT...
...vironment value of R_HOME
--> Q&A for bioinformatics, please visit the website: https://www.omicsclass.com/
--> R beginners ? I suggest your learning R language: https://study.omicsclass.com/index
Error in library(R.utils) : there is no package called ‘R.utils’
Execution halted...
...R language: https://study.omicsclass.com/index
Error in scan(file = file, what = what, sep = sep, quote = quote, dec = dec, :
line 17 did not have 10 elements
Calls: read.table -> scan
Execution halted