...] [optional, default: 1]
-X x.lab, --x.lab x.lab
the label for x axis [optional, default: log2FC]
-Y y.lab, --y.lab y.lab
the label for y axis [optional, default: -log10(FDR)]
-T title, --title title
the label for main tit...
...io/stats/ordination/_principal_coordinate_analysis.py:143: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some ofthe largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are lar...
...束位置？可以基于参数start和 end进行设置：
With rainbow, the parameters start and end can be used to specify particular subranges of hues. The following values can be used when generating such a subrange: red = 0, yellow = 1/6, green = 2/6, cyan = 3/6, blue = 4/6 and magent...
...ransform on layer: countsvst.flavor='v2' set. Using model with fixed slope and excluding poisson genes.Variance stabilizing transformation of count matrix of size 20445 by 2713Model formula is y ~ log_umiGet Negative Binomial regression parameters per geneUsing 2000 genes, 2713 cellsError: useNames ...
... user guide tree examples)Select tree input format.Tree text editor: Paste the tree contents here. or use demo tree option to load trees from user guide examples.2. 基础设置：
上传完成之后，可以点edit，做一些进化树的基础设置，和2.0差不多：
3 高级设置 书写...
...ax.print") -- omitted 4 rows ]
[1] "create DEG_list object is over"
[1] "the number of origin gene is 27781"
[1] "the number of gene (after filtering) is 17256"
Error in newCountDataSet(countData = de$filterCounts, conditions = condition) :
could not find function "newCountDataSet"
Calls: s...
...并这些gvcf文件，但是提示我错误：A USER ERROR has occurred: The list of input alleles must contain <NON_REF> as an allele but that is not the case at position 763769; please use the Haplotype Caller with gVCF output to generate appropriate records。由于缺乏bam文件我只能...