...ence, 2009, 326(5951): 433-436.[3]Evanno G, Regnaut S, Goudet J. Detecting thenumber of clusters of individuals using the software STRUCTURE: a simulationstudy[J]. Molecular ecology, 2005, 14(8): 2611-2620.[4] Porras-Hurtado L, Ruiz Y, Santos C, et al. An overview of STRUCTURE:applications, paramet...
...显著差于低风险组，风险预测模型具有很好的预后价值：The risk score for OS = (0.1504 × expression value of DYNLL1) +(0.1673 × expression value of PLOD2) + (0.0944 × expression value of PHYHIP) + (0.1141 × expression value of HPR) + (0.0727 × expression value of PGK2) + (0....
...0-1][optional,default:1]
-X x.lab, --x.lab x.lab
the label for x axis[optional,default:log2FC]
-Y y.lab, --y.lab y.lab
the label for y axis[optional,default:-log10(FDR)]
-T title, --title title
the label for main title[opt...
...tabolome analysis of senescent rice (Oryza sativa L.) seeds: insights into the mechanism of germination vigor and seedling morphogenesis”的转录组代谢组联合分析文章。”
01
—
研究背景
种子活力是种子发芽和出苗率、幼苗生长潜势、植株抗逆能力和生...
...h.edu/wiki/Vt#Installation
#this will create a directory named vt in the directory you cloned the repository
1. git clone https://github.com/atks/vt.git
#change directory to vt
2. cd vt
#run make, note that compilers need to support the c++0x standard
3. make
#you can test the build...
...需要的程辑包：fastcluster
载入程辑包：‘fastcluster’
The following object is masked from ‘package:stats’:
hclust
Error: package or namespace load failed for ‘WGCNA’ in rbind(info, getNamespaceInfo(env, "S3methods")):
number of columns of matrices must mat...
...] [optional, default: 1]
-X x.lab, --x.lab x.lab
the label for x axis [optional, default: log2FC]
-Y y.lab, --y.lab y.lab
the label for y axis [optional, default: -log10(FDR)]
-T title, --title title
the label for main tit...
...io/stats/ordination/_principal_coordinate_analysis.py:143: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some ofthe largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are lar...
...束位置？可以基于参数start和 end进行设置：
With rainbow, the parameters start and end can be used to specify particular subranges of hues. The following values can be used when generating such a subrange: red = 0, yellow = 1/6, green = 2/6, cyan = 3/6, blue = 4/6 and magent...
...ransform on layer: countsvst.flavor='v2' set. Using model with fixed slope and excluding poisson genes.Variance stabilizing transformation of count matrix of size 20445 by 2713Model formula is y ~ log_umiGet Negative Binomial regression parameters per geneUsing 2000 genes, 2713 cellsError: useNames ...
... user guide tree examples)Select tree input format.Tree text editor: Paste the tree contents here. or use demo tree option to load trees from user guide examples.2. 基础设置：
上传完成之后，可以点edit，做一些进化树的基础设置，和2.0差不多：
3 高级设置 书写...
...ax.print") -- omitted 4 rows ]
[1] "create DEG_list object is over"
[1] "the number of origin gene is 27781"
[1] "the number of gene (after filtering) is 17256"
Error in newCountDataSet(countData = de$filterCounts, conditions = condition) :
could not find function "newCountDataSet"
Calls: s...