...三对对于一些不可靠的结果差异会大一些，模糊区域；
The domain hits table
In protein search programs, the --domtblout option produces the domain hits table. There is one line for each domain. There may be more than one domain per sequence. The domain table has 22 whitespacedel...
...non-specific hits) and domain model scope (superfamilies, multi-domains). They can be seen in both the Concise display and Full display, except for non-specific hits, which are shown only in the Full Display.PSSM-IDA PSSM ID is the unique identifier for a domain model's position-specific scor...
z-Transform
Sometimes one has the problem to make two samples comparable, i.e. to compare measured values of a sample with respect to their (relative) position in the distribution. An often used aid is the z-transform which converts the values of a sample into z-scores:
with
zi ... z-transfo...
... website (http://www.autophagy.lu/clustering/index.html, last update time: 2021–12-3), and a total of 206 ARGs were obtained.We extracted 232 autophagy-related genes from the human autophagy database (HADb, http://autophagy.lu/clustering/index.html).
焦亡(Pyroptosis) 相关基因：
We identi...
...整导入，然而运行官方软件“sh runPipeExample.sh”时报错“The host did not accept the connection within timeout of 60000 ms;”，请问如何解决，希望详细点。
Prepare data for GoSlim.
8 Sequences send to preform GoSlim: goslim_generic.obo
Error while generating GoSlim res...
....txt -c /wtmp2/user049/yushiyan/pca/cpca_no1.txt -lm 1 -n 1
GEMMA 0.98.5 (2021-08-25) by Xiang Zhou, Pjotr Prins and team (C) 2012-2021
Reading Files ...
**** INFO: no intercept term is found in the cvt file: a column of1s is added.
## number of total individuals = 21
## number of analyzed ind...
...yza sativa: a history of duplications. PLoS Biol. 2005, 3 (2): e38-10.1371/journal.pbio.0030038.[3] Ramamoorthy R, Jiang SY, Kumar N, Venkatesh PN, Ramachandran S: A comprehensive transcriptional profiling ofthe WRKY gene family in rice under various abiotic and phytohormone treatments. Plant Cell ...
...n Paths for Cox’s Proportional Hazards Model via Coordinate Descent.” Journalof Statistical Software, Articles 39 (5): 1–13. https://doi.org/10.18637/jss.v039.i05.Therneau, Terry M., and Patricia M. Grambsch. 2000. Modeling survival data: extending the Cox model. Springer.Tibshirani R (19...
...b.io/software/clusterProfiler
If you use clusterProfiler in published research, please cite:
Guangchuang Yu, Li-Gen Wang, Yanyan Han, Qing-Yu He. clusterProfiler: an R package for comparing biological themes among gene clusters. OMICS: A Journalof Integrative Biology. 2012, 16(5):284-287.
DO...
...：
Tool: bedtools nuc (aka nucBed)Version: v2.25.0Summary: Profiles the nucleotide content of intervals in a fasta file.Usage: bedtools nuc [OPTIONS] -fi <fasta> -bed <bed/gff/vcf>Options: -fi Input FASTA file -bed BED/GFF/VCF file of ranges to ...
...s were determined using p-value < 0.05 and fold change ≥ 1.5. What is the rationale behind using pvalues instead of adjusted pvalues/FDR. Multiple testing correction is a very crucial aspect of RNA-Seq data analysis since there are thousands of genes being tested and using p values instead of a...
...身影，因此绘制一幅精美的互作网络图十分重要。
例如2021年5月发表在Mol Ther Nucleic Acids中的文献《Comprehensive analysis to identify DLEU2L/TAOK1 axis as a prognostic biomarker in hepatocellular carcinoma》，影响因子8.89。作者首先分析PTEN相关的差异...