找到约 15 条结果

文章 GATK 4.4.0报错“ A JNI error has occurred, please check your installation and try again

...出现“Error: A JNI error has occurred, please check your installation and try again“的一种解决方案_a jni error has occurred,please check your-CSDN博客

文章 vt软件安装

... vt 2. cd vt #run make, note that compilers need to support the c++0x standard 3. make #you can test the build 4. make test 报错1: gcc -g -Wall -O2 -I.  -c -o cram/cram_index.o cram/cram_index.cgcc -g -Wall -O2 -I.  -c -o cram/cram_io.o cram/cram_io.ccram/cram_io.c:61:18: error: lzma...

文章 python代码到pubmed上搜索关键字,统计每年发文章数量

代码如下: from Bio import Entrez import time import pandas as pd import matplotlib.pyplot as plt from concurrent.futures import ThreadPoolExecutor, as_completed # 设置你的邮箱(NCBI 要求) Entrez.email = "your_email@example.com" Entrez.tool = "PubMedYearStatsTool" def search_p...

文章 perl的内置函数scalar

...面并没有这一项。 Forces EXPR to be interpreted in scalar context and returns the  value of EXPR. 中文含义:强制表达式EXPR在标量上下文进行解释。 假如,我定义了一个数组@arr=("one","two","three"),该数组在标量环境下返回自身的长度。 print @a...

文章 merge_metadata_genexpdata.r 在metadata中添加基因表达数据

...-m metadata -g expset -b by [--log2] [-o outdir] [-p prefix]merge metadata and gene expression:optional arguments:  -h, --help            show this help message and exit  -m metadata, --metadata metadata                        input metadata file path with suvival time [require...

问题 利用gff文件提取基因结构,结果文件是空的

...小时前 use Getopt::Long;my %opts;use Data::Dumper;GetOptions( \%opts, "in1=s", "in2=s", "out=s", "h" );if (   !defined( $opts{in1} )|| !defined( $opts{in2} )|| !defined( $opts{out} )|| defined( $opts{h} ) ){&USAGE;}open( IN1, "$opts{in1}" )  || die "open $opts{in1} failed\n";open( IN2, "$...

文章 NCBI 下载病毒基因组的gff3

NCBI (National Center for Biotechnology Information),是我们经常使用的数据库,其本身在数据以外也为我们提供了很多好用的小工具。病毒的基因组比较小,通常不会像大型基因组那样释放的时候带有gff3和gtf文件,此时如果我们想获得病...

文章 deseq_analysis.r 差异基因分析DESeq2

...e/1500 optional arguments: -h, --help show this help message and exit -i filepath, --input filepath input read count file [required] -m filepath, --metadata filepath metadata file , required -t treatname, --treatname treatname ...

问题 如何修改perl脚本,利用id号抽提gff文件中的位置信息?

...: use Getopt::Long; my %opts; use Data::Dumper; GetOptions (\%opts,"in1=s","in2=s","out=s","h");  if (! defined($opts{in1}) ||! defined($opts{in2})||! defined($opts{out}) || defined($opts{h})){ &USAGE; } open (IN1,"$opts{in1}") || die "open $opts{in1} failed\n"; open (IN2,"$opts{in2}...

文章 WGCNA 中Relationship between module eigengenes图片绘制--plotMEpairs函数

...airwise scatterplots of given eigengenes, the distribution of their values and their pairwise correlations. plotMEpairs(   datME,    y = NULL,    main = "Relationship between module eigengenes",    clusterMEs = TRUE,    ...) datMEa data frame containing expression data,...

文章 从原始测序数据开始分析单细胞数据

...       --log2stderr > whitelist.txt; # ## Step 3: Extract barcdoes and UMIs and add to read names #umi_tools extract --bc-pattern="(?P<discard_1>CTCTTTCCCT)(?P<cell_1>.{10})(?P<discard_2>ACGACGCTCTTCGAGTGATTGCTTGTGACGCCTT)(?P<cell_2>.{8})(?P<umi_1>.{12})T{4}.*"...

文章 串联重复基因 tandem和segmental的区别与联系

...基因家族的时候会有以下疑惑:基因家族串联重复基因tandem和segmental的区别与联系,如何理解基因家族加倍与复制?要回答以上问题,要从基因家族形成方式上去解释: 基因家族的形成方式: 1.染色体組多倍化( Whole genome duplic...

问题 无法链接到docker守护进程

...8:00" level=warning msg="containerd config version `1` has been deprecated and will be removed in containerd v2.0, please switch to version `2`, see https://github.com/containerd/containerd/blob/main/docs/PLUGINS.md#version-header" 然后我按照GitHub的导航操作了还是没解决这个报错...

问题 无法链接到docker守护进程

...8:00" level=warning msg="containerd config version `1` has been deprecated and will be removed in containerd v2.0, please switch to version `2`, see https://github.com/containerd/containerd/blob/main/docs/PLUGINS.md#version-header" 然后我按照GitHub的导航操作了还是没解决这个报错...

文章 从gff文件当中提取对应转录本ID的基因结构信息用于GSDS绘制结构图脚本更新

..._gene_exon_from_gff.pl 用法:perl ../script/get_gene_exon_from_gff.pl -in1 WRKY_domain_new_out_emoved_redundant.txt -in2 Arabidopsis_thaliana.TAIR10.31.gff3 -out gene_exon_info.gff 输出结果(部分): 脚本源代码: use Getopt::Long; my %opts; use Data::Dumper; GetOptions( \%o...