...
* removing ‘/share/work/biosoft/R/R-v3.6.1/lib64/R/library/adegenet’
The downloaded source packages are in
‘/tmp/RtmpuYCUHI/downloaded_packages’
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done
Warning messages:
1: In install.packages("adegenet") :
in...
WARNING:
list index out of range
File "/share/work/biosoft/OrthoFinder/OrthoFinder_v2.5.4/scripts_of/parallel_task_manager.py", line 209, in Worker_RunCommands_And_Move
fn(fns)
File "/share/work/biosoft/OrthoFinder/OrthoFinder_v2.5.4/scripts_of/trees_msa.py", line 262, in trim_fn
trim.ma...
...需要的程辑包：fastcluster
载入程辑包：‘fastcluster’
The following object is masked from ‘package:stats’:
hclust
Error: package or namespace load failed for ‘WGCNA’ in rbind(info, getNamespaceInfo(env, "S3methods")):
number of columns of matrices must mat...
...s, each ID is associated to text label, which can be displayed directly on the node branch, or outside the tree#lines starting with a hash are comments and ignored during parsing#=================================================================## MANDATORY SETTINGS ...
...required package: BiocGenerics
Attaching package: ‘BiocGenerics’
The following object is masked from ‘package:limma’:
plotMA
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base...
...文件有3种类型，分别对应着不同的定量方法。
FPKM
The Fragments per Kilobase of transcript per Million mapped reads (FPKM) calculation normalizes read count by dividing it by the gene length and the total number of reads mapped to protein-coding genes.
Upper Quartile FPKM
Th...
...ax.print") -- omitted 4 rows ]
[1] "create DEG_list object is over"
[1] "the number of origin gene is 27781"
[1] "the number of gene (after filtering) is 17256"
Error in newCountDataSet(countData = de$filterCounts, conditions = condition) :
could not find function "newCountDataSet"
Calls: s...
...
-g GENE_SYMBOL, --gene_symbol GENE_SYMBOL
Enter the file path that contains the gene
symbol[required]
-H HEIGHT, --height HEIGHT
the height of dumbbell plot[optional,default 6]
-W WIDTH, --width WIDTH
...
...CREMτ activity and is required for spermiogenesis
期刊：Nucleic Acids Research
IF：10.162产品名称：p300 Polyclonal Antibody
产品货号：E-AB-32456
相关文献还有很多，如果大家感兴趣的话，可以自行去查阅，一次看个够！
三、绝对真实的图片
选择...
...：P/primary, S/secondary and I,i/inversioncm Number of minimizers on the chains1 Chaining scores2 Chaining score ofthe best secondary chainNM otal number of mismatches and gaps in the alignmentMD To generate the ref sequence in the alignment（在比对过程中生成参考序列）...
...？要怎么解决呢？谢谢老师~
To see where Circos looks for the file, use
circos -debug_flag io
To see how configuration files work, create the example image, whose
configuration and data are found in example/. From the Circos distribution
directory,
...