Use of uninitialized value $1 in hash element at /mnt/data/home/tycloud/annovar/annovar/2019Oct24/annotate_variation.pl line 1445, <$QUERY> line 3623855.

NOTICE: Finished analyzing 2000000 query variants

Use of uninitialized value $1 in hash element at /mnt/data/home/tycloud/annovar/annovar/2019Oct24/annotate_variation.pl line 1445, <$QUERY> line 3623855.

NOTICE: Finished analyzing 3000000 query variants

NOTICE: Reading FASTA sequences from /mnt/data/home/tycloud/my_reseq/ref/unknown_refGeneMrna.fa ... Done with 20994 sequences

WARNING: A total of 49 sequences will be ignored due to lack of correct ORF annotation

NOTICE: Running with system command <coding_change.pl  /mnt/data/home/tycloud/my_reseq/annovar/snp.refGene.exonic_variant_function.orig /mnt/data/home/tycloud/my_reseq/ref/unknown_refGene.txt /mnt/data/home/tycloud/my_reseq/ref/unknown_refGeneMrna.fa -alltranscript -out /mnt/data/home/tycloud/my_reseq/annovar/snp.refGene.fa -newevf /mnt/data/home/tycloud/my_reseq/annovar/snp.refGene.exonic_variant_function>

Error: invalid record found in exonic_variant_function file (exonic format error):

这是不是软件版本问题啊？老师，很奇怪，上个月用的时候还可以运行，这个月一样报错，输入文件是同一个vcf文件，应该可以排除输入文件的问题。