找到约 15 条结果

文章 FGF21突变让你吃多甜食也不发胖?

...gar Intake Is Associated with Body Shape, Lower Total Body-Fat Percentage, and Higher Blood Pressure[J]. Cell Reports, 2018, 23(2): 327-336.

文章 BiocManager::install("seqinr")时报错

...source* package ‘Rcpp’ ... ** package ‘Rcpp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++14 -I"/share/work/biosoft/R/R-v4.2.2/lib64/R/include" -DNDEBUG -I../inst/include/ -I/share/work/biosoft/zlib/include -I/share/work/biosoft/bzip2/bzip2-v...

文章 p值还是 FDR ?

...设计了几种不同的估算模型。其中使用最多的是Benjamini and Hochberg方法,简称BH法。该方法分两步完成,具体如下:  2.1  假设总共有m个候选基因,每个基因对应的p值从小到大排列分别是p(1),p(2),…,p(m)  2.2  若想控制FDR不能超过q...

问题 请问为什么GWAS用tassel mlm模型画的manhattan图什么都没有呢 也没有报错 能生成一个什么都没有的图片 只有坐标和题

...nicle_manhattan -c 1.3e-6 --> Q&A for bioinformatics, please visit the website: www.omicsclass.com --> Recommended to learn R language: --> https://study.163.com/course/introduction/1209073807.htm?share=1&shareId=1030291076 Loading required package: ggplot2 input chromosome nam...

问题 cc1plus: error: unrecognized command line option "-std=gnu++11"

...rce* package ‘later’ ... ** package ‘later’ successfully unpacked and MD5 sums checked ** using staged installation Running configure script -latomic linker flag not needed. ** libs g++ -std=gnu++11 -I"/share/work/biosoft/R/R-v3.6.1/lib64/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS...

文章 华大stereo-seq 添加上底片转换成10X格式方便scanpy和seurat读入分析

...criptomics \    --kit-version="Stereo-seq T FF V1.3" \    --sequencing-type="PE75_50+100" \    --chip-mask=./C04042E3/fastq/C04042E3.barcodeToPos.h5 \    --organism=mouse \    --tissue=brain \    --threads-num 20 \    --fastqs./C04042E3/fastq \    --reference=/share/ref/Mus_musculus/...

文章 BWA比对及Samtools提取mapped reads

...: 1:Only READ1 is set. 2:Only READ2 is set. O:Either both READ1 and READ2 are set;or neither is set. 对于PE测序reads,同时指定-1 R1.fq-2 R2.fq-s singleton.fq 时,samtools会将flag1和flag2配对的序列分别输出到-1-2指定的文件,对于无法匹配的flag 1/2,...

文章 单细胞转录组数据挖掘流程记录-BRCA乳腺癌(GSE161529)

...10GenesPerUMI 0.7 \ -o 01.qc-$i -p GSE161529 --metadata.col.name Sample type --metadata.value $i ${i%%-*} done Rscript $scripts/merge_seurat_obj.r -i $(ls 01.qc-*/GSE161529.afterQC.rds) \ -o 02.merge -p GSE161529 Rscript $scripts/seurat_sc_cluster.r --rds 02.merge/GSE161529.rds \ -p GSE1615...

文章 picrust2用法

...ID中注释信息,避免错误:no ASV ids overlap between input FASTA and sequence abundance table get_fa_by_id.pl $workdir/5.pick_otu_qiime/pick_de_novo_otus/otu_table_clean.txt $workdir/5.pick_otu_qiime/pick_de_novo_otus/rep_set/qiime_rep_set.fasta rep_set.farm -rf picrust2_outpicrust2_pipeli...

文章 ConsensusClusterPlus 包对基因表达数据进行一致性聚类

...t(1 - fm), method = finalLinkage) # # Cluster method : average # Number of objects: 128 results[[2]][["consensusClass"]][1:5] # 01005 01010 03002 04006 04007 # 1 1 1 1 1 计算聚类一致性 (cluster-consensus) 和样品一致性 (item-consensus) icl <- ca...

文章 给一个fastq ID列表,输出指定ID对应的双端fastq文件:

.../);$keep{$tmp[0]}=1;}close(IN);my$i=0;while ( my $obj1=$fq1->next_seq() and my $obj2=$fq2->next_seq() ) {my$id1=$obj1->id;my$id2=$obj2->id;#print "$id1,$id2\n";#die;if( exists $keep{$id1} or exists $keep{$id2}){$fqo1->write_seq($obj1);$fqo2->write_seq($obj2);}}$fq1->close();$fq2...

文章 biolinux虚拟机不能为虚拟机打开一个新任务,或者一直黑屏解决办法

...拟电脑 Bio-Linux-8.0.7 打开一个新任务.VT-x is disabled in the BIOS for all CPU modes (VERR_VMX_MSR_ALL_VMX_DISABLED).返回 代码: E_FAIL (0x80004005)组件: ConsoleWrap界面: IConsole {872da645-4a9b-1727-bee2-5585105b9eed} 报错截图: 解决办法: 当...

文章 非肿瘤文章集锦

...RNA-mRNA调控网络 Maternal smoking-induced lung injuries in dams and offspring via inflammatory cytokines  https://pubmed.ncbi.nlm.nih.gov/33989842/  https://pubmed.ncbi.nlm.nih.gov/34306596/   自噬相关心血管疾病

文章 dcaps标记设计软件——SNP_Primer_Pipeline

...CGGGAGAGGAAATTACTGCCTTGGTGCTG 输出结果: index   product_size    type    start   end     diff_number     3'differall     length  Tm      GCcontent       any 3'       end_stability   hairpin primer_seq      ReverseComplement       penalty compl_any       compl_e...

文章 挖掘公共基因大数据的时代已经到来

...数据的挖掘典范,当属TCGA数据库。 TCGA一A座金矿 TCGA(The Cancer Genome Atlas )数据库,目前收录了33种癌症,11000多列病人的多个组学的数据以及临床表型信息。组学数据包括基因组的变异,转录组,miRNA, 甲基化,蛋白质组等。...