找到约 15 条结果

文章 Mac使用FileZilla连接服务器-SSH

Mac使用FileZilla连接服务器-SSH 文章标签: FileZilla 版权 Mac OS 10.14.x FileZilla 3.46.0 使用SSH,即通过sftp连接服务器前需要为FileZilla指明本机私钥位置。 在FileZilla中,导航栏FileZilla->Settings->Connection->SFTP->Add key file,会...

文章 绘制Upset 图

...数据: #读入文件mydata<-read.table("Venn.txt",header=T,fill=T,check.names=FALSE,row.names = 1,na.strings="")head(mydata) 过滤基因: #去掉都不存的基因mydata <- mydata[rowSums(mydata) != 0, ] 绘图: upset(mydata,nsets = 10, #可视化数据集数量nintersec...

问题 第一步文件导入qiime2一直出错,按照视频设置好

There was a problem importing /work/my_amplicon/A/manifest.ckd.txt:   /work/my_amplicon/A/manifest.ckd.txt is not a(n) PairedEndFastqManifestPhred33V2 file:   Filepath on line 1 and column "forward-absolute-filepath" could not be found ($datadir/SRR7441413_1.fastq) for sample "SRR7441413".

文章 fasta格式文件介绍 What is FASTA format?

...息(description),描述信息可有可无 Sequences are expected to be represented in the standard IUB/IUPAC amino acid and nucleic acid codes, with these exceptions: lower-case letters are accepted and are mapped into upper-case;a single hyphen or dash can be used to represent a gap of ...

问题 在用tassel对vcf进行sort时报的错,有哪位大佬知道怎么操作吗

...Heap Size: 29809 Mb Use -Xmx option in start_tassel.pl or start_tassel.bat to increase heap size. Included with tassel standalone zip.

文章 Evolview:进化树设置标签的颜色

...l  第三列:控制命令 控制命令说明选项功能adapply color to all descendantsprefix将颜色应用到以第一列的字符起始的所有叶节点上suffix将颜色应用到以第一列的字符结尾的所有叶节点上anywhere将颜色应用到包含第一列的字符的所有叶...

问题 NJ 树脚本报错

...ne_tree_analysis -n NJ 报错为:os.rename('/'+args.outdir.strip()+'/outfile','/'+args.outdir.strip()+'/infile') FileNotFoundError: [Errno 2] No such file or directory: '//work/gene_family_demo/03.gene_tree_analysis/outfile' -> '//work/gene_family_demo/03.gene_tree_analysis/infile' 请问...

问题 omicsclass/gene_family同时有latest和V1.0.1两个版本,挂载时出错

Error response from daemon: pull access denied for it, repository does not exist or may require 'docker login': denied: requested access to the resource is denied. 麻烦老师解答一下,之前听docker blast那里挺顺利的,在基因家族分析课这里卡住了

问题 老师,请问您们一下,我有使用McScan的经验,但是McScanX的是由方法有些地方不是很懂?

$$ blastall -i query_file -d database –p blastp –e 1e-10 –b 5 –v 5 –m 8 –o xyz.blast 是什么意思呢?

文章 perl处理文件路径

...用perl的模块来解决则更加迅速、准确。 用到的模块  File::Basename  这里有三种方法:fileparse、basename、dirname。 其用法如下:          ($name,$path,$suffix) = fileparse($fullname,@suffixlist);          $basename = basename($fullname,@suffix...

问题 群体遗传学GWAS课程docker很多命令无法运行

... Number of subPop samples[found in VCF] is 0 sub Group Population szie is too small, SubGroup sample size: 0 ##begin pair-wise R^2 cal. after filter Remain SNP Number :     0 #% number bin is        1 1%......-->100%.......          ALL done Used [perl  ../bin/Plot_XX.pl ] to Pl...

文章 真菌比较基因组组装,三代真菌基因组组装

...Gene predictions and functional annotation For P. noxius, the gene predictor Augustus (ver3.2.1; Stanke, Tzvetkova, & Morgenstern, 2006) was trained on a gene training set of complete core genes from CEGMA (ver2.5; Parra, Bradnam, & Korf, 2007) and subsequently used for manual curation of ...

问题 index.sh构建索引时,其他文件都正常,但是这个unknown_refGeneMrna.fa文件是空的

WARNING: Cannot identify sequence for PH02Gene38415.t1 (starting from hic_scaffold_16:44053792) NOTICE: Finished writting FASTA for 0 genomic regions to unknown_refGeneMrna.fa

问题 16s分析导入数据遇到同样的问题,请问您解决了吗?

...2022.8/data_2/manifest.ckd.txt is not a(n) PairedEndFastqManifestPhred33V2 file:   Filepath on line 3 and column "forward-absolute-filepath" could not be found ($datadir/AWGB16SAA2134120-38-28_R1.fq.gz) for sample "AWGB16SAA2134132-38-28".

文章 windows安装Aspera Connect软件

...到软件的安装路径,默认安装一般会安到这里:C:\Program Files\IBM\Aspera Connect\bin,大家可以找一下或者搜索 ascp.exe 这个文件。 鼠标右键“我的电脑”选“属性”,选择“高级系统设置”,找到“环境变量(N)...”。 在系统...