...真 vs. 假 snp的特征值（annotation values）统计分布
One ofthe most helpful ways to approach hard-filtering is to visualize the distribution of annotation values for a truth set called using a particular pipeline. These distributions are sharped by both the pipeline methodology and the...
...qconf (configure SEG by command line) to configure SGE.Detailed ReferenceThe more authorative and comprehensive reference is http://gridscheduler.sourceforge.net/htmlman/htmlman1/qstat.html and http://gridscheduler.sourceforge.net/htmlman/htmlman1/qconf.htmlA simpler configuration tutorial is gi...
...includes both fixed and random effects. Including random effects gives MLM the
ability to incorporate information about relationships among individuals. When a genetic marker based kinship
matrix (K) is used jointly with population structure (Q), the “Q+K” approach improves statistical power com...
...0M0Stage IIT3
下面给家介绍一下，具体的分期
Diagram showing the T stages of bladder cancer
Pathologic TNM staging of thymoma and related entities, AJCC 8th edition
Definition / generalApplicable to thymoma, thymic carcinoma, thymic neuroendocrine tumors, combined thymic carcinomaFi...
...value protein_coding -t '!' -o ga_protein_coding.gff3
Indeed we changed the ID for this L1 feature to be unique but we do not
change the Parent attribute ofthe child features to reflect this change.
Why? because we do not know to which L1the child feature was part-of because several Parent have...
...列英文：
2496 out of 2456 data points have been sucessfully mapped to the bins ofthe choosen maping. However the pathway you choose does not show any of this bins.Either add those bins manually to this pathway or choose a different Pathway!
数据ID和mapping文件里边的BIN已经是对应...
...rg/10.1186/s12967-020-02366-0 doi:10.1002/1878-0261.12747
To deduce the hypoxia status, an algorithm of t-distributed
Stochastic Neighbor Embedding (t-SNE) was
applied [19]. t-SNE, a nonparametric, unsupervised
method, can divide or condense patients into several distinct
clusters, based ...
...ses of a reference transcript)8rRepeat. Currently determined by looking at the soft-masked reference sequence and applied to transcripts where at least 50% ofthe bases are lower case9uUnknown, intergenic transcript10xExonic overlap with reference on the opposite strand11sAn intron ofthe transfrag ...
...evomics.org/resources/substitution-models/nucleotide-substitution-models/
The use of maximum likelihood (ML) algorithms in developing phylogenetic hypotheses requires a model of evolution. The frequently used General Time Reversible (GTR) family of nested models encompasses 64 models with differe...
...R Input gene expression file path[required]
-m META, --meta META Input the clinical information file path that contains
the grouping[required]
-n GROUP_NAME, --group_name GROUP_NAME
Specifies the column name that contains grouping
...
... -format => 'fasta');while ( my $seqobj = $in->next_seq() ) {
# the human read-able id ofthe sequence
my $id=$seqobj->id(); # string of sequence
my $seq=$seqobj->seq();
# a description ofthe sequence
my $desc=$seqobj->desc();
# one of 'dna','rna','protein' https://www.bi...
...message and exit
-i maffile, --maf maffile
input the maf file[required]
-m metadata, --meta metadata
input metadata file path[required]
-g group, --group group
input group id in metadata file to classification
...