找到约 15 条结果

文章 clusterprofile 支持的物种GO和KEGG富集分析orgdb

...g.Mmu.eg.dbBioconductor Package MaintainerGenome wide annotation for Rhesus45org.Bt.eg.dbBioconductor Package MaintainerGenome wide annotation for Bovine46org.Ss.eg.dbBioconductor Package MaintainerGenome wide annotation for Pig47org.Cf.eg.dbBioconductor Package MaintainerGenome wide annotation for ...

问题 GATK 报错

gatk VariantFiltration : --filter-expression 显示 Input /work/my_reseq/4.snp_indel/var_qc2/BSA_no_filter.vcf   must support random access to enable queries by interval. If it's a file, please index it using the bundled tool IndexFeatureFile该怎么处理呀

问题 $python2 -m jcvi.compara.catalog ortholog ath rapa --cscore=0.7这一步报错

...ile `rapa.bed` Traceback (most recent call last):   File "/home/spider/soft/miniconda3/envs/py27/lib/python2.7/runpy.py", line 174, in _run_module_as_main     "__main__", fname, loader, pkg_name)   File "/home/spider/soft/miniconda3/envs/py27/lib/python2.7/runpy.py", line 72, in _run_code ...

问题 转录组上游分析之定量比对Hisat2出现内部异常错误

...am --read-lengths 63,60,59,62,58,57,61,56,51,55,49,54,44,40,52,43,53,50,47,45,39,46,42,37,48,41,38 -1 /tmp/2597247.inpipe1 -2 /tmp/2597247.inpipe2 ?-x ?/home/vip6/database/genome/Ensembl/Homo_sapiens/GRCh38_release104/Homo_sapiens.GRCh38_release104.genome (ERR): hisat2-align exited with value 1 ...

文章 免疫 侵润 分析 ESTIMATE分析

..." author: "Omicsgene" output:   html_document:     toc: true     theme: united date: '`r format(Sys.time(),"%d %B, %Y")`' --- ![image](https://note.youdao.com/yws/api/group/92990402/noteresource/D0C43D04435648A4A5A9B36556716345/version/421?method=get-resource&shareToken=76A1AE...

问题 TCGA下载数据保存

下载FPKM的时候,保存结果时出现Error in read_connection_(con) : Evaluation error: error reading from the connection. In addition: Warning message: In (function (con, what, n = 1L, size = NA_integer_, signed = TRUE,  :   invalid or incomplete compressed data

问题 R语言出现error

当R studio运行 source("https://bioconductor.org/biocLite.R") 出现Error in file(filename, "r", encoding = encoding) : cannot open the connection In addition: Warning message: In file(filename, "r", encoding = encoding) : InternetOpenUrl failed: '操作超时'。 请问怎么解决?

文章 NCBI下载SRR并转换为fastq文件

...cation | Genome Biology | Full Text (biomedcentral.com) 数据可用性:The entire genome resequencing data have been deposited at GenBank under the accession PRJNA356989.  想下载该篇文献中某一样品的fastq原始数据,看了一些下载教程,方法各异,看完思路还是...

问题 samtools sort 时候报错

您好,我是用bwa 比对二代双端测序数据到draft genome.fa,得到的sam文件用samtools sort的时候报错,fail to read the header from "assembly_illumina.sam" 不知道是什么原因?SAM文件这样的,谢谢!

问题 bioconductor source代码报错

...or in file(filename, "r", encoding = encoding) :   cannot open the connectionIn addition: Warning message:In file(filename, "r", encoding = encoding) :  InternetOpenUrl failed: '操作超时'。请问怎么解决? 

文章 根据fastq ID列表,输出指定ID对应的双端或单端fastq文件

...ped fastq file.')    parser.add_argument('input_fastq_gz', help='Path to the input fastq.gz file')    parser.add_argument('output_file', help='Path to the output file containing gene names')    args = parser.parse_args()    extract_gene_names(args.input_fastq_gz, args.output_file)if __name__...

文章 TukeyHSD报错

Error in TukeyHSD.aov(., ...) : no factors in the fitted model Calls: %>% ... is.data.frame -> <Anonymous> -> TukeyHSD -> TukeyHSD.aov In addition: Warning message: In replications(paste("~", xx), data = mf) : non-factors ignored: group1 Execution halted 数据框组代表...

文章 癌细胞的十大特征

在2011年3月出版的Cell杂志上,《Hallmarks of Cancer: The Next Generation》这篇论文总结了癌细胞的10大特征。 1.自给自足生长信号(Self-Sufficiency in Growth Signals) 2.抗生长信号的不敏感(Insensitivity to Antigrowth Signals) 3.抵抗细胞死亡(Res...

文章 16S多样性分析docker镜像发布及使用

...ccd  3.data_qc#利用fastp工具去除adapter#--qualified_quality_phred the quality value that a base is qualified. #            Default 15 means phred quality >=Q15 is qualified. (int [=15])#--unqualified_percent_limit how many percents of bases are allowed...

问题 biolinux报错,不能打开一个新任务

The virtual machine 'Bio-Linux-8.0.7' has terminated unexpectedly during startup with exit code 1 (0x1). More details may be available in 'D:\VirtualBox VMs\Bio-Linux-8.0.7\Logs\VBoxHardening.log'.