找到约 15 条结果

文章 使用MCscan进行多物种共线性分析与绘图

...共线性分析要用到的bed格式: python3 -m jcvi.formats.gff bed --type=gene --key=ID Oryza_sativa.gff -o Oryza_sativa.bed python3 -m jcvi.formats.gff bed --type=gene --key=ID Arabidopsis_thaliana.gff -o Arabidopsis_thaliana.bed python3 -m jcvi.formats.gff bed --type=gene --key=ID Solanum_tu...

问题 基因组注释进行deepTE 分类时报错,The TensorFlow library was compiled to use SSE4.1 instructions, but these aren't available on your machine. Aborted (core dumped)

文章 中国学者揭示:不运动不吃药也能瘦!

...》上发表了题为“Very-low-protein diets lead to reduced food intake and weight loss, linked to inhibition of hypothalamic mTOR signaling, in mice”的文章,为我们找到了一条不经运动、不吃药就能减肥的科学线索:1%蛋白质饮食可通过部分依赖下丘脑mT...

文章 qiime自带的alpha_diversity.py脚本报错

....egg/skbio/diversity/alpha/_ace.py", line 70, in ace raise ValueError("The only rare OTUs are singletons, so the ACE " ValueError: The only rare OTUs are singletons, so the ACE metric is undefined. EstimateS suggests using bias-corrected Chao1 instead. 这是因为ace指数通过那些稀有otu...

问题 转录组自主分析的差异基因分析和KEGG富集分析时发生错误,求老师解答。

...omType = opt$idtype, toType = opt$totype, OrgDb = opt$ann.db) :   26.02% of input gene IDs are fail to map... --> No gene can be mapped.... --> Expected input gene ID: --> return NULL... NULL Error in (function (classes, fdef, mtable)  :   unable to find an inherited method for fu...

文章 ssGSEA.r 单样本基因集富集分析

...基因集  两列数据,第一列细胞类型,第二列为基因 CellType Symbol B cells MS4A1 B cells TCL1A B cells MS4A1 B cells TCL1A B cells HLA-DOB B cells PNOC B cells KIAA0125 B cells CD19 B cells CR2 B cells IGHG1 B cells FCRL2 B cells BLK B cells...

文章 箱线图与分面--ggplot2

...c("sample1","sample2"),len=4)dat = data.frame(A,B,C,D,E)names(dat)[1] = c("type")names(dat)[2:5]=Fdat = melt(dat,variable.name="Sample",value.name = "Num")head(dat) 绘制基本的箱线图 ##################按照类型进行统计 P_box=ggplot(data=dat,aes(x=type,y=Num)) + geom_boxplot(fill="gr...

问题 请问,有些文献中,给出的KME值,在WGCNA教程中,生成的"10_GS_and_MM.xls"文件中,哪个和它是对应的?比如下图所示。文献链接如下:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5429000/

问题 检查数据是否正确时 出现以下错误:> exprSize = checkSets(multiExpr) Error in checkSets(multiExpr) : data does not appear to have the correct format. Consider using fixDataStructureor setting checkStructure = TRUE when calling this function.

...c vectors Error in checkSets(multiExpr) : data does not appear to have the correct format. Consider using fixDataStructureor setting checkStructure = TRUE when calling this function.

文章 TCGA数据分析ceRNA的套路

...给大家介绍一篇ceRNA研究套路的文章《comprehensive analysis of a long noncoding rna-associated competing endogenous rna network in colorectal cancer》。 1. 研究思路 研究思路详述:     1.1. 从TCGA公开的数据中下载结直肠癌相关的数据,包括lncRNA, miR...

问题 fastq-dump下载问题?

...======= An error occurred during processing. A report was generated into the file '/root/ncbi_error_report.xml'. If the problem persists, you may consider sending the file to 'sra@ncbi.nlm.nih.gov' for assistance. =============================================================

文章 R magick 包安装包错

...omType = opt$idtype, toType = opt$totype, OrgDb = opt$ann.db) :   26.02% of input gene IDs are fail to map... --> No gene can be mapped.... --> Expected input gene ID: --> return NULL... NULL Error in (function (classes, fdef, mtable)  :   unable to find an inherited method for fu...

文章 R安装报错:configure: error: --with-readline=yes (default) and headers/libs are not available

这个错误表示在编译某个软件时,没有找到 readline 库。Readline 库提供了命令行交互式输入的功能,很多软件都依赖它。要解决这个问题,您可以按照以下步骤进行操作: 检查 readline 库是否已经安装。可以使用以下命令来检查...

问题 用sudo mount -t vboxsf gene-family gene-family将Windows中的共享文件夹挂载到Linux中的共享文件夹中显示mounting failed with the error: No such device

问题 老师,您好,我在将windows中的共享文件夹,挂载到linux系统的共享文件夹目录的时候,显示错误信息/sbin/mount.vboxsf:mounting failed with the error:No such device。麻烦问一下,应该怎么解决,谢谢啦!