找到约 15 条结果

文章 Biopython之序列输入

...。这使您可以执行以下操作: from Bio import SeqIO for record in SeqIO.parse("example.fasta", "fasta"): print(record.id) or using a handle: from Bio import SeqIO with open("example.fasta", "r") as handle: for record in SeqIO.parse(handle, "fasta"): print(record.id) 当...

文章 R脚本报错|URL 'https://raw.githubusercontent.com/YinLiLin/R-CMplot/master/R/CMplot.r': Timeout of 60 seconds was reached

...本的时候,出现报错,提示CMplot这个包连接超时。 Error in file(filename, "r", encoding = encoding) :  cannot open the connection to 'https://raw.githubusercontent.com/YinLiLin/R-CMplot/master/R/CMplot.r'Calls: source -> fileIn addition: Warning message:In file(filename, "r", e...

文章 compare_stat_boxplot.r metadata中变量分组T检验比较并绘制box图

...       [-y ylab] [-o path] [-n prefix] [-H number] [-W number]box plot and stat :optional arguments:  -h, --help            show this help message and exit  -m filepath, --metadata filepath                        input metadata file path[required]  -v variate [variate ...], ...

问题 安装WGCNA编辑包出现如下问题怎么解决?

Error in biocLite(c("GO.db", "preprocessCore", "impute")) :    could not find function "biocLite"

文章 相关性分析及散点图绘制-脚本使用

...r plot optional arguments: -h, --help show this help message and exit -m meta, --meta meta Input contains two columns of data for calculating the correlation[required] -n name, --name name Specifies the column name of the column[opt...

文章 Plant Communications | 浙大团队解析比克氏棉全基因组进化规律及其色素腺体和棉酚形成机制

...发表了题为“A reference-grade genome assembly for Gossypium bickii and insights into its genome evolution and formation of pigment gland and gossypol”的研究论文。该文解析了具有“子叶色素腺体延缓形成”性状的野生棉种比克氏棉(Gossypium bickii,G1)的全...

问题 16s分析导入数据遇到同样的问题,请问您解决了吗?

...is not a(n) PairedEndFastqManifestPhred33V2 file:   Filepath on line 3 and column "forward-absolute-filepath" could not be found ($datadir/AWGB16SAA2134120-38-28_R1.fq.gz) for sample "AWGB16SAA2134132-38-28".

文章 vcf格式文件基础知识与编辑操作详解

...  0/1:35:4       0/2:17:2       1/1:40:3 整体说明信息(Meta-information lines) VCF文件的开头是整体注释信息,通常以##作为起始,其后一般接以FILTER,INFO,FORMAT等字样。 例如:以##FILTER开头的行,表示注释VCF文件当中第7列中缩写词...

问题 eggNOG 保留蛋白序列时提示同一 ID 被多个一级特征使用,而子特征的 Parent 属性没有得到相应更新,导致注释关系不明确的问题,该怎么解决

...icate but has an ID already used. /!\ AGAT might mix up the child features and create chimeric records. Indeed we changed the ID for this L1 feature to be unique but we do not change the Parent attribute of the child features to reflect this change. Why? because we do not know to which L1 the child ...

文章 群落分析的冗余分析(RDA)概述

.... Numerical Ecology. Second English edition. Developments in Environmental Modelling, 1998, 20, Elsevier Mccune B P, Grace J B. Analysis of Ecological Communities. Journal of Experimental Marine Biology and Ecology, 2002, 289(2). Rao C R. The use and interpretation of principal component analysis in...

问题 提取基因序列

....fa 出现了这样的提示:Can‘t call method "subseq" on an underfined value at script/tiquxulie.pl line32,<IN> line 1. A01%,输出的结果为空。 基因位置的结果是对的

问题 差异基因表达分析

...信息 ### Failed to create bus connection: No such file or directory Warning message: ###Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. ###Please use `linewidth` instead.   是否是正确的  以及输出文件仅有4个 与课程视频中的预期不同  所得到的...

文章 R语言基础入门—判断语句

...的代码,如果 为 false 则不执行。 实例 x <- 50Lif(is.integer(x)) {   print("X 是一个整数")} 执行以上代码,输出结果为: [1] "X 是一个整数" if...else语句 一个 if 语句后可跟一个可选的 else 语句,else 语句在布尔表达式为假...

文章 16S多样性分析docker镜像发布及使用

...      omicsclass/sratoolkit          SRAtoolkit v2.10.3 and aspera v3.9.9.177872     0                  omicsclass/ampliseq-q2         Amplicon sequencing qiime2 v2020.2 image        0                  omicsclass/ampli...

文章 三代纠错软件LoRDEC安装

...提高GCC版本为 6.4: export PATH=/share/work/biosoft/gcc/gcc-v6.4.0/bin/:$PATHexport LD_LIBRARY_PATH=/share/work/biosoft/gcc/gcc-v6.4.0/lib64/:$LD_LIBRARY_PATH 解压并编译: tar -xjvf lordec-src_0.9.tar.bz2cd lordec-src_0.9make clean all -j8 报错1: 提示/usr/bin/cc 下的gcc...