运行动植物泛基因组教程02.gene_family.sh命令如下：orthofinder.py -f pep \
-S diamond \
-M msa \
-A muscle \
-T fasttree \
-t 10 \
-a 2 报错如下：Best outgroup(s) for species tree---------------------------------2024-11-15 10:50:56 : Starting STRIDEERROR: Species tree inf...
...E)###########input###############################################individual_analysis<- c(Arg[1])reprication<-c(Arg[2])filter_value<-c(Arg[3])population_structure<-c(Arg[4]) #RIL or F2depth_analysis<-c(1:300)###########input##########################################################geno...
...qiime2-2020.8/lib/python3.6/site-packages/q2cli/commands.py", line 329, in __call__ results = action(**arguments) File "<decorator-gen-404>", line 2, in summarize File "/share/work/biosoft/conda/Miniconda3.8/envs/qiime2-2020.8/lib/python3.6/site-packages/qiime2/sdk/action.py", line 24...
... File "/biosoft/miniconda/miniconda2/lib/python2.7/runpy.py", line 174, in _run_module_as_main
"__main__", fname, loader, pkg_name)
File "/biosoft/miniconda/miniconda2/lib/python2.7/runpy.py", line 72, in _run_code
exec code in run_globals
File "/biosoft/miniconda/miniconda2/li...
... (most recent call last):
File "/biosoft/miniconda/envs/qiime1/bin/pick_open_reference_otus.py", line 453, in <module>
main()
File "/biosoft/miniconda/envs/qiime1/bin/pick_open_reference_otus.py", line 432, in main
minimum_failure_threshold=minimum_failure_threshold)
...
...() ;open IN,"$ARGV[0]" or die "$!";my%ref=();while ( my $seq = $in->next_seq() ) { my($id,$sequence,$desc)=($seq->id,$seq->seq,$seq->desc); $ref{$id}=$seq;}$in->close();open IN,"$ARGV[1]" or die "$!";while (<IN>) {chomp;
next if /^#/;
my @a= split /\t...