找到约 15 条结果

问题 变异结果质控过滤,去掉低质量变异结果时报错i

...ted"> After filtering, kept 132 out of 132 Individuals Outputting VCF file... After filtering, kept 0 out of a possible 144323059 Sites No data left for analysis! Run Time = 2247.00 seconds INFO:    Cleaning up image...

问题 Error in seq.default(grps[start] + 1, grps[start + 1] - 1) : 'from' must be of length 1此外: Warning messages: 1: In file(con, "r") : InternetOpenUrl失败:’不能连接到吊销服务器,或者未能获得最终响应。' 2: In readLines(...) : 读'http://bioconductor.org/config.yaml'时最后一行未遂

在rstudio中运行 BiocManager::install("TCGAbiolinks"),迟迟无法下载数据,并显示上方错误,请问怎么解决

问题 bioconductor source代码报错

... source("https://bioconductor.org/biocLite.R ") 时:出现Error in file(filename, "r", encoding = encoding) :   cannot open the connectionIn addition: Warning message:In file(filename, "r", encoding = encoding) :  InternetOpenUrl failed: '操作超时'。请问怎么...

文章 Metadata CRC error detected at xfs _ bmbt _ read _ verify+0x12/0xb0 [xfs], xfs _ bmbt block 0xc9132f8 [ 4.863216] XFS(dm-0): Unmount and run xfs _ repair

...n/ initramfs/ rdsosreport. txt"  Entering emergency mode. Exit the shell to continue.  Type"journalctl"to view system logs.  You might want to save"/ run/ initramfs/ rdsosreport. txt"to a USB stick or / boot  after mounting them and attach it to a bug report. :/# 11  sh: 11: command not f...

问题 vcftools --gzvcf all.varFilter.vcf.gz --recode --recode-IN.............els |gzip - > clean.vcf.gz这一步输出的vcf.gz文件,用 bcftools query -l clean.vcf.gz | wc -l查看样本名出现报错

Failed to read from clean.vcf.gz: unknown file type 0 这是为什么呢

问题 Failed to load R0 module F:\/VMMR0.r0: The path is not clean of leading double slashes: 'F:\/VMMR0.r0' (VERR_SUPLIB_PATH_NOT_CLEAN). 代码: E_FAIL (0x80004005) 组件: ConsoleWrap 界面: IConsole {872da645-4a9b-1727-bee2-5585105b9eed}

不能为虚拟电脑bio—Linux—8.0.7打开一个新任务

文章 corr_network.r—ggraph包绘制展示相关性的网络图

...it -g GENE_DATA, --gene_data GENE_DATA Enter the file path that contains the gene symbol and gene grouping[required] -p P_DATA, --p_data P_DATA input data file path[required] -r R_DATA, --r_data R_DATA ...

问题 关于mapman使用过程的问题

...下列英文: 2496 out of 2456 data points have been sucessfully mapped to the bins of the choosen maping. However the pathway you choose does not show any of this bins.Either add those bins manually to this pathway or choose a different Pathway! 数据ID和mapping文件里边的BIN已经是对...

文章 tassel 模型公式表示方法

...h fixed and random effects. Including random effects gives MLM the ability to incorporate information about relationships among individuals. When a genetic marker based kinship matrix (K) is used jointly with population structure (Q), the “Q+K” approach improves statistical power compared to “...

问题 GEOquery包的getGEO函数无法下载 无法与服务器建立连接

... gset = getGEO(GSE, GSEMatrix =TRUE, AnnotGPL=TRUE,destdir=workdir)Found 1 file(s)GSE2685_series_matrix.txt.gztrying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE2nnn/GSE2685/matrix/GSE2685_series_matrix.txt.gz'Error in download.file(sprintf("https://ftp.ncbi.nlm.nih.gov/geo/series/%s/%s/matrix/%...

文章 GeneDoc绘制漂亮的多重序列比对图

...变为黑色。 然后再点击 Edit → Copy Select Blocks to → RTF File,即可导出.rtf文件,使用word即可打开该文件。 或者copy bitmap 都内存,然后到PPT或者word文档中粘贴即可 导出后文件如下: 当然小编审美能力有限,大家可以按照...

文章 Linux Shell 编程基础 简化自己的工作批量运行命令

...算符 文件测试运算符用于检测 Unix 文件的各种属性-b file检测文件是否是块设备文件,如果是,则返回 true-c file检测文件是否是字符设备文件,如果是,则返回 true-d file检测文件是否是目录,如果是,则返回 true-f file检测文件...

问题 老师,您好,我按照课程安装doekcr,下载了群体遗传学的镜像,在启动镜像的时候总是显示错误,请问老师该如何解决呢?

...lass/pop-evol-gwas:latest 总是显示Error response from daemon:failed to create task for container: failed to create shim task: OCI runtime create failed: runc create failed: unable to start container process: error during container init: error setting cgroup config for procHooks process: loa...

问题 安装github上的包报错:

...tcreds_set()` and unset GITHUB_PAT in .Renviron (or elsewhere) if you want to use the more secure git credential store instead. Error: Failed to install 'unknown package' from GitHub:   HTTP error 401.   Bad credentials   Rate limit remaining: 57/60   Rate limit reset at: 2024-07-30 14:13...

问题 基因组重测序使用qualimap 出现Exception in thread "main" java.awt.AWTError: Can't connect to X11 window server using 'localhost:18.0' as the value of the DISPLAY variable.

... do   name=${id##*/}   name=${name%%.*}   #1.比对率分析   $samtools flagstat ${bwadir}/${name}.sorted.dedup.bam > ${bwa_qcdir}/${name}.map.stat.txt   #2.片段inner size,片段选择是否异常   $picard CollectInsertSizeMetrics -Xmx4g \       I=${bwadir}/${name}.sorted.de...