...r DNA site substitution. The models are listed here from the least complex to the most parameter rich.
Jukes-Cantor (JC, nst=1): equal base frequencies, all substitutions equally likely (PAUP* rate classification: aaaaaa, PAML: aaaaaa) (Jukes and Cantor 1969)
Felsenstein 1981 (F81, nst=1): variabl...
...opendir ( DIR, $dirname ) || die "Error in opening dir $dirnamen";while(($filename = readdir(DIR))){print("$filenamen"); #循环输出该目录下的文件。### do something ###}closedir(DIR);
例 把每个文件复制一次：
#!/usr/bin/perl
use warnings;use stric...
... processed by Stacks version 2.6[1].We used the process_radtags function to clean the tags, discarding reads of low quality (-q), removing reads with uncalled bases (-c) and rescuing barcodes and radtags (-r). SNP calling for each individual was done using the program denovo_map.pl of Stacks. Th...
...pare函数的时候，出现报错，请各位给予分析或者
Starting to add information to samples
=> Add clinical information to samples
Add FFPE information. More information at:
=> https://cancergenome.nih.gov/cancersselected/biospeccriteria
=> http://gdac.broadinstitute.org/...