...tematic biases in dye coupling and hybridization efficiencies, as well as other technical biases in the DNA probes andthe print tip used to spot the array.[3] By minimizing these systematic variations, true biological differences can be found. To determine whether normalization is needed, one can ...
...g
Genomic DNA from each sample was prepared for libraries construction. The library preparations were sequenced by using an Illumina HiSeqX platform and 150bp paired-end reads were generated.
Data filtering and alignment
The recently released genome of Agaricus_bisporus_var_bisporus was dow...
...ls to be included from FAM file.176 individuals to be included. 0 males, 0 females, 176 unknown.Reading PLINK BIM file from [all.LDfilter.bim]...Error: Line 36188 of [all.LDfilter.bim] contains illegal chr number, please checkAn error occurs, please check the options or data
视频课程推荐：...
...odeler/) was used to update the repeat sequence library by identifying thetypes of repeat sequences, and RepeatMasker was finally employed to mask the patchouli genome. As a byproduct of LTR_retriever, the LAI was used to assess the patchouli genome assembly quality24.
The repeat masked genome was...
...Autophagy-associated genes (relevance score > 4) were retrieved at the GeneCards website (https://www.genecards.org/) by searching the term “autophagy.”
A total of 1,287 ARGs were acquired from the Human Autophagy Database (HADb; http://autophagy.lu/clustering/index.html) and Autophag...
...息。该数据的表头解释如下：
Composite ElementA unique ID for the array probe associated with a CpG siteBeta ValueRepresents the ratio between the methylated array intensity and total array intensity, falls between 0 (lower levels of methylation) and 1 (higher levels of methylation)Chrom...
Each circle ofthe MEGAN tree represents a taxon in the NCBI taxonomy and is labeled by its name andthe number of reads that were assigned to the taxon and not to a subtaxon. The size ofthe circle is scaled logarithmically to represent the number of reads.
图中圆圈大小代表该物...
...浏览；
表格结果说明如下：
Query输入的序列IDHit typeCD-Search results can include hit types that represent various confidence levels (specific hits, non-specific hits) and domain model scope (superfamilies, multi-domains). They can be seen in both the Concise display ...
... were available for three strains of P. noxius (KPN91, A42 and 718-S1) andthey were assembled using ALLPATH-LG (ver 49688; Butler et al., 2008) assembler and improved
using Pilon (Walker et al., 2014). The P. noxius assembly was further merged with metassembler (ver
1.5; Wences & Schatz, 2015),...
...round the globe. The following table lists these populations and indicates what data we currently have available for them.
Population CodePopulation DescriptionSuper Population CodeSequence Data AvailableAlignment Data AvailableVariant Data AvailableCHBHan Chinese in Beijing, ChinaEAS111JPTJapa...
...alysis of human genes. LENS takes one or two lists of genes and determines the network of protein-protein interactions that connects them. LENS computes several statistics including associations ofthe genes in the interactome to diseases, drugs, pathways, and GWASs, as well as, statistics of networ...