文章 tcga_gene_exp_download.r TCGA数据下载脚本使用说明。

...er.chunk files.per.chunk                        This will make the API method only download n                        (files.per.chunk) files at a time. This may reduce the                        download problems when the data size is too large             ...

文章 如何绘制SNP密度图

...<- unlist(strsplit( opt$color, split = ","))CMplot(  snp, plot.type="d",  bin.size=opt$binsize, col=color, xlab = "SNP",  file="jpg", dpi=300, memo=opt$name, file.output=TRUE, verbose=TRUE)CMplot(  snp, plot.type="d",  bin.size=opt$binsize, col=color,  file="pdf", mem...

问题 运行代码的时候出错，我确认文件都存在，报错代码如下所示

...────── Delimiter: "\t" chr (20): Wheel, BarcodeSequence, Genotype, Microbiota, Cohoused, Gender, Tr... dbl (12): #SampleID, Donor_No, Exitus, Geschlecht, SofaAnstieg, Hauotdiagnos... lgl  (1): Groupf ℹ Use `spec()` to retrieve the full column specification for this data. ℹ S...

文章 iTOL进化树外层添加圆环

...#lines starting with a hash are comments and ignored during parsing#select the separator which is used to delimit the data below (TAB,SPACE or COMMA).This separator must be used throught this file (except in the SEPARATOR line, which uses space).#SEPARATOR TABSEPARATOR SPACE#SEPARATOR COMMA#label is...

用户 晓屿Li_Isle of faces

问题 tassel 报错

 ERROR net.maizegenetics.plugindef.AbstractPlugin - Matrix size exceeds the size of an integer

问题 New state of 'nil' is invalid

...老师的教程输入命令进入虚拟机时一直报这个“New state of 'nil' is invalid”。尝试卸载Docker Desktop后重启电脑重新安装还是这样。这种情况应该怎么办呢？

文章 胃癌预后signature数据挖掘-自噬基因

...显著差于低风险组，风险预测模型具有很好的预后价值：The risk score for OS = (0.1504 × expression value of DYNLL1) +(0.1673 × expression value of PLOD2) + (0.0944 × expression value of PHYHIP) + (0.1141 × expression value of HPR) + (0.0727 × expression value of PGK2) + (0....

话题 Too many levels of symbolic links

文章 群体结构分析structure原理

...ence, 2009, 326(5951): 433-436.[3]Evanno G, Regnaut S, Goudet J. Detecting thenumber of clusters of individuals using the software STRUCTURE: a simulationstudy[J]. Molecular ecology, 2005, 14(8): 2611-2620.[4] Porras-Hurtado L, Ruiz Y, Santos C, et al. An overview of STRUCTURE:applications, paramet...

文章 DEG_limma.R 差异基因分析limma

...0-1][optional,default:1] -X x.lab, --x.lab x.lab the label for x axis[optional,default:log2FC] -Y y.lab, --y.lab y.lab the label for y axis[optional,default:-log10(FDR)] -T title, --title title the label for main title[opt...

文章 perl的内置函数scalar

...这一项。 Forces EXPR to be interpreted in scalar context and returns the  value of EXPR. 中文含义：强制表达式EXPR在标量上下文进行解释。 假如，我定义了一个数组@arr=("one","two","three")，该数组在标量环境下返回自身的长度。 print @arr; #列表...

文章 IF=4.3 | 衰老水稻种子的转录组代谢组联合分析

...tabolome analysis of senescent rice (Oryza sativa L.) seeds: insights into the mechanism of germination vigor and seedling morphogenesis”的转录组代谢组联合分析文章。” 01 — 研究背景 种子活力是种子发芽和出苗率、幼苗生长潜势、植株抗逆能力和生...

文章 vt软件安装

...h.edu/wiki/Vt#Installation #this will create a directory named vt in the directory you cloned the repository 1. git clone https://github.com/atks/vt.git #change directory to vt 2. cd vt #run make, note that compilers need to support the c++0x standard 3. make #you can test the build...

问题 在RStudio中安装WGCNA包后调用WGCNA包提示错误

...需要的程辑包：fastcluster 载入程辑包：‘fastcluster’ The following object is masked from ‘package:stats’:     hclust Error: package or namespace load failed for ‘WGCNA’ in rbind(info, getNamespaceInfo(env, "S3methods")):  number of columns of matrices must mat...