文章 split_sample.r根据生存数据对样本随机分组

...ent] [-t time] [-p propotion] [-o outdir] [-n name] The complete data set is randomly divided into training set and test set optional arguments: -h, --help show this help message and exit -i input, --input input input matrix data [requir...

问题 ALLHIC1挂载出现问题

...8 Find all occurrences of a motif in a genome.  Make a 'POS' file listing these occurrences, and also a BED file re       9      10 SYNTAX: make_bed_around_RE_site.pl <fasta> <motif> <range>      11 fasta:  A fasta file representing a genome (reference or draft assemb...

问题 RNAseq有参转录组分析差异表达分析这一环节出现一些问题，ggplot版本问题

...required package: BiocGenerics Attaching package: ‘BiocGenerics’ The following object is masked from ‘package:limma’:     plotMA The following objects are masked from ‘package:stats’:     IQR, mad, sd, var, xtabs The following objects are masked from ‘package:base...

文章 计算肿瘤纯度和免疫评分 R包总结

...terations in human cancer. Nat Biotechnol. 2012;30(5):413-21. [1] GSVA: The Gene Set Variation Analysis package for microarray and RNA-seq data  [2] Xue Y, Tong L, LiuAnwei Liu F, et al. Tumor‑infiltrating M2 macrophages driven by specific genomic alterations are associated with prognosis in...

文章 Metadata CRC error detected at xfs _ bmbt _ read _ verify+0x12/0xb0 [xfs], xfs _ bmbt block 0xc9132f8 [ 4.863216] XFS(dm-0): Unmount and run xfs _ repair

...sosreport. txt"  Entering emergency mode. Exit the shell to continue.  Type"journalctl"to view system logs.  You might want to save"/ run/ initramfs/ rdsosreport. txt"to a USB stick or / boot  after mounting them and attach it to a bug report. :/# 11  sh: 11: command not found :/# 1s  ...

文章 perl 中 $#ARGV 是什么意思

...，或者直接操作最后一个命令行参数。官方文档说明： The array @ARGV contains the command-line arguments intended for the script. $#ARGV is generally the number of arguments minus one, because $ARGV[0] is the first argument, not the program's command name itself. See $0 for the ...

文章 Pacbio三代全长转录组(Iso-Seq ) 融合基因的分析

...组(Iso-Seq 3)  中融合基因的分析，可以采用Cupcake 中的“fusion_finder.py” 这个脚本来分析。 fusion_finder.py --input hq_isoforms.fastq --fq -s hq_isoforms.fastq.sorted.sam -o lq_isoforms.fasta.fusion --cluster_report_csv cluster_report.csv 参数说明： hq_isoforms....

问题 MUMmer共线性分析报错suffix tree construction failed: textlen=712946597 larger than maximal textlen=536870908

...ucmer ../reference.fasta ../query.fa 1: PREPARING DATA 2,3: RUNNING mummer AND CREATING CLUSTERS # reading input file "nucmer.ntref" of length 712946597 # construct suffix tree for sequence of length 712946597 # (maximum reference length is 536870908) # (maximum query length is 4294967295) # process...

文章 如何绘制SNP密度图

...<- unlist(strsplit( opt$color, split = ","))CMplot(  snp, plot.type="d",  bin.size=opt$binsize, col=color, xlab = "SNP",  file="jpg", dpi=300, memo=opt$name, file.output=TRUE, verbose=TRUE)CMplot(  snp, plot.type="d",  bin.size=opt$binsize, col=color,  file="pdf", mem...

文章 An introduction to PERMANOVA and ANOSIM

PERMANOVA（Permutational Multivariate Analysis of Variance）和 ANOSIM（Analysis of Similarities）都是用于分析和比较群组间多元数据差异的统计方法。它们特别适用于生态和环境科学领域，但也可应用于其他需要分析复杂数据集的科学研究。这两...

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问题 使用GATK的GenomicsDBImport合并gvcf导入db时报错Unexpected compressed block length: 1 for /work/GATK/BN14.g.vcf.gz

...---------------------------------- 10:53:02.159 INFO  GenomicsDBImport - The Genome Analysis Toolkit (GATK) v4.4.0.0 10:53:02.160 INFO  GenomicsDBImport - For support and documentation go to https://software.broadinstitute.org/gatk/ 10:53:02.160 INFO  GenomicsDBImport - Executing as root@1fea4...