找到约 15 条结果

文章 1000G千人基因组人群分类亚群缩写对照

...群中突变的等位基因频率: There are 26 different populations which are part of our study from many different locations around the globe. The following table lists these populations and indicates what data we currently have available for them. Population CodePopulation DescriptionS...

文章 相关性分析及热图绘制-脚本使用

...l,default:False] -t TYPE, --type TYPE Specifies the presentation style, which can be 'full','lower' or 'upper'[optional,default upper] -d ORDER, --order ORDER Specify how correlation coefficients are arranged, which can be ...

问题 Docker Toolbox 命令进入虚拟机出来New state of 'nil' is invalid. 无法ROOT

文章 转录组比对软件HISAT2的使用说明

...ault)   --qseq             q输入文件格式是 Illumina's qseq format   -f                 输入文件格式是多序列的FASTA .fa/.mfa   -r                 输入是一行序列   -c                 <m1>, <m2>, <r> are sequences them...

问题 dadi

...创建annovar库 gtfToGenePred -genePredExt $gtf unknown_refGene.txt retrieve_seq_from_fasta.pl --format refGene --seqfile $fa --outfile unknown_refGeneMrna.fa unknown_refGene.txt table_annovar.pl $data/goat.recode.vcf ./ -buildver unknown -out snp -remove -protocol refGene -operation g -nastri...

问题 微生物多样性分析课程:运行r脚本出错 ,提示there is no package called ‘getopt’

...cumulation_curve   出错,提示: Error in library(getopt) : there is no package called ‘getopt’ Execution halted 请问老师,这个r脚本是需要调用getopt这个包?服务器里是安装有这个包的,该如何解决?谢谢!

文章 Python虚拟环境解决不兼容问题

...虚拟环境 $ pwd /Users/zhangqiuxue # 查看一下当前的python $ which python /usr/bin/python # 创建工作目录,方便以后关联虚拟环境 $ mkdir Workdir $ cd Workdir # 创建虚拟环境,命名为venv, 名称可以随便取,最好是能辅助记忆的名称 $ virtualenv venv...

问题 -bash: SNP/S126-R132.HaplotypeCaller.log: No such file or directory

...mp; 产生错误:-bash: SNP/S126-R132.HaplotypeCaller.log: No such file or directory

问题 我运行你在有道笔记中的GEO数据库分析遇到问题?

...因有多个entrezid的情况,这里处理一下 DEG_list_kegg <- c() for(i in degs$entrezid){   DEG_list_kegg<-c(DEG_list_kegg,eval(parse(text = i))) } 为什么这一步得出的DEG_list_kegg还是1487行?

文章 组装好的基因组通过agp文件得到contig序列

...y, and contigs, respectively. This generates assembly.swapped.chain file which you could then use in liftOver, in the direction from assembly to contigs, as mentioned at the beginning. liftOver -gff assembly.gff3 assembly.swapped.chain contigs.gff3 unmapped This should generate a GFF on the co...

问题 python_mcscan,error-OSError: [Errno 2] No such file or directory: 'kpsewhich'

问题 ImportError: liblapack.so.3: cannot open shared object file: No such file or directory

问题 运行GDCprepare(query, save=FALSE)时错误

...)`: ! Can't subset columns past the end. i Locations 2, 3, and 4 don't exist. i There is only 1 column. Run `rlang::last_error()` to see where the error occurred. There were 50 or more warnings (use warnings() to see the first 50) > rlang::last_error() <error/vctrs_error_subscript_oob&g...

问题 Failed to create bus connection: No such file or directory

输入文件 运行代码 #go 富集分析 Rscript $scriptdir/go_enrich.r -l gene.list  -n $scriptdir/go2name.tsv  \   -g go2gene.tsv -o go 输出文件 咱们的课程是输出很多文件,但是我只能输出一个

文章 R 安装magick 报错

Error: package or namespace load failed for ‘magick’ in dyn.load(file, DLLpath = DLLpath, ...):  unable to load shared object '/share/work/biosoft/R/R-v4.2.2/lib64/R/library/00LOCK-magick/00new/magick/libs/magick.so':   /share/work/biosoft/R/R-v4.2.2/lib64/R/library/00LOCK-magick/00new/mag...