找到约 15 条结果

问题 R gsl 报错

... * removing ‘/share/work/biosoft/R/R-v4.2.2/lib64/R/library/gsl’ The downloaded source packages are in ‘/tmp/RtmpSMiwnl/downloaded_packages’ Updating HTML index of packages in '.Library' Making 'packages.html' ... done Warning message: In install.packages("gsl") :   installation o...

文章 MUMmer + SVMU : CNVs

...于 lastz 太慢，因此多样本 批量运行if [ -f lastz.cmds.sh ] ; then rm -f lastz.cmds.shfiif [ -f svmu.cmds.sh ] ; then rm -f svmu.cmds.shfi#批量产出命令for query in An1 C24 Cvi Eri Kyo Ler Sha;do    ln -s ../04.snp_indel/$query.delta .  echo "lastz ref.fa[multiple]  $query.fa[...

文章 KEGG富集分析弦图绘制

...水平（1为中表达，0为低表达，2为高表达，3为通路），type为节点类型（gene或pathway） 二、导入数据 三、绘制弦图，在绘制弦图前首先捋清楚弦图的各个元素，并排列各个元素的优先顺序，类似PS中的图层。 1.连线links 注...

文章 微生物生态研究中常用数据库简介--转载

...降解（Biodegradation）、金属循环（Metal Cycling）及其他（Other）等七类功能基因。每类都包含几到上百种功能marker基因，可被用于功能marker基因高通量测序后的比对及功能基因引物设计等。   主页：     http://fungene.cme.msu.edu/ ...

问题 TCGA数据生存时间怎么确定？

...27] "tumor_tissue_site_other"                     "histological_type"                           [29] "days_to_initial_pathologic_diagnosis"        "age_at_initial_pathologic_diagnosis"         [31] "year_of_initial_pathologic_diagnosis"        "initial_patholo...

文章 利用WGCNA分析提升转录组测序文章档次

...evelopment and seed size/weight determination in chickpea analysis期刊：The Plant JournalIF：5.7性状：鹰嘴豆籽粒大小 实验材料与方法 这篇文章与上一篇文章思路几乎一致，只是研究的物种变成了鹰嘴豆。同样的，也是选取了两个籽粒大小差异...

文章 小麦TCP基因家族分析文献解读及原文献下载

...点此链接）：Genome-Wide Identification and Expression Profiling of the TCP Family Genes in Spike and Grain Development of Wheat (Triticum aestivum L.).pdf 小麦TCP基因家族分析文献解读 日常科研中你我经会常遇到看不懂的图表，不会挖掘的数据，没有思路的...

文章 ggplot2控制坐标轴截距交点位置（原点）

...ctor of length two giving multiplicative and additive expansion constants. These constants ensure that the data is placed some distance away from the axes. The defaults are c(0.05, 0) for continuous variables, and c(0, 0.6)for discrete variables.连续性和离散型都涉及，默认值不同，...

文章 Pacbio三代全长转录组(Iso-Seq ) 融合基因的分析

...组(Iso-Seq 3)  中融合基因的分析，可以采用Cupcake 中的“fusion_finder.py” 这个脚本来分析。 fusion_finder.py --input hq_isoforms.fastq --fq -s hq_isoforms.fastq.sorted.sam -o lq_isoforms.fasta.fusion --cluster_report_csv cluster_report.csv 参数说明： hq_isoforms....

文章 split_sample.r根据生存数据对样本随机分组

...ent] [-t time] [-p propotion] [-o outdir] [-n name] The complete data set is randomly divided into training set and test set optional arguments: -h, --help show this help message and exit -i input, --input input input matrix data [requir...

问题 ALLHIC1挂载出现问题

...8 Find all occurrences of a motif in a genome.  Make a 'POS' file listing these occurrences, and also a BED file re       9      10 SYNTAX: make_bed_around_RE_site.pl <fasta> <motif> <range>      11 fasta:  A fasta file representing a genome (reference or draft assemb...

问题 RNAseq有参转录组分析差异表达分析这一环节出现一些问题，ggplot版本问题

...required package: BiocGenerics Attaching package: ‘BiocGenerics’ The following object is masked from ‘package:limma’:     plotMA The following objects are masked from ‘package:stats’:     IQR, mad, sd, var, xtabs The following objects are masked from ‘package:base...

文章 计算肿瘤纯度和免疫评分 R包总结

...terations in human cancer. Nat Biotechnol. 2012;30(5):413-21. [1] GSVA: The Gene Set Variation Analysis package for microarray and RNA-seq data  [2] Xue Y, Tong L, LiuAnwei Liu F, et al. Tumor‑infiltrating M2 macrophages driven by specific genomic alterations are associated with prognosis in...

文章 Metadata CRC error detected at xfs _ bmbt _ read _ verify+0x12/0xb0 [xfs], xfs _ bmbt block 0xc9132f8 [ 4.863216] XFS(dm-0): Unmount and run xfs _ repair

...sosreport. txt"  Entering emergency mode. Exit the shell to continue.  Type"journalctl"to view system logs.  You might want to save"/ run/ initramfs/ rdsosreport. txt"to a USB stick or / boot  after mounting them and attach it to a bug report. :/# 11  sh: 11: command not found :/# 1s  ...

文章 perl 中 $#ARGV 是什么意思

...，或者直接操作最后一个命令行参数。官方文档说明： The array @ARGV contains the command-line arguments intended for the script. $#ARGV is generally the number of arguments minus one, because $ARGV[0] is the first argument, not the program's command name itself. See $0 for the ...