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文章 ggplot2控制坐标轴截距交点位置(原点)

...ctor of length two giving multiplicative and additive expansion constants. These constants ensure that the data is placed some distance away from the axes. The defaults are c(0.05, 0) for continuous variables, and c(0, 0.6)for discrete variables.连续性和离散型都涉及,默认值不同,...

文章 split_sample.r根据生存数据对样本随机分组

...ent] [-t time] [-p propotion] [-o outdir] [-n name] The complete data set is randomly divided into training set and test set optional arguments: -h, --help show this help message and exit -i input, --input input input matrix data [requir...

文章 Pacbio三代全长转录组(Iso-Seq ) 融合基因的分析

...组(Iso-Seq 3)  中融合基因的分析,可以采用Cupcake 中的“fusion_finder.py” 这个脚本来分析。 fusion_finder.py --input hq_isoforms.fastq --fq -s hq_isoforms.fastq.sorted.sam -o lq_isoforms.fasta.fusion --cluster_report_csv cluster_report.csv 参数说明: hq_isoforms....

问题 RNAseq有参转录组分析差异表达分析这一环节出现一些问题,ggplot版本问题

...required package: BiocGenerics Attaching package: ‘BiocGenerics’ The following object is masked from ‘package:limma’:     plotMA The following objects are masked from ‘package:stats’:     IQR, mad, sd, var, xtabs The following objects are masked from ‘package:base...

文章 计算肿瘤纯度和免疫评分 R包总结

...terations in human cancer. Nat Biotechnol. 2012;30(5):413-21. [1] GSVA: The Gene Set Variation Analysis package for microarray and RNA-seq data  [2] Xue Y, Tong L, LiuAnwei Liu F, et al. Tumor‑infiltrating M2 macrophages driven by specific genomic alterations are associated with prognosis in...

文章 Metadata CRC error detected at xfs _ bmbt _ read _ verify+0x12/0xb0 [xfs], xfs _ bmbt block 0xc9132f8 [ 4.863216] XFS(dm-0): Unmount and run xfs _ repair

...sosreport. txt"  Entering emergency mode. Exit the shell to continue.  Type"journalctl"to view system logs.  You might want to save"/ run/ initramfs/ rdsosreport. txt"to a USB stick or / boot  after mounting them and attach it to a bug report. :/# 11  sh: 11: command not found :/# 1s  ...

文章 perl 中 $#ARGV 是什么意思

...,或者直接操作最后一个命令行参数。官方文档说明: The array @ARGV contains the command-line arguments intended for the script. $#ARGV is generally the number of arguments minus one, because $ARGV[0] is the first argument, not the program's command name itself. See $0 for the ...

问题 MUMmer共线性分析报错suffix tree construction failed: textlen=712946597 larger than maximal textlen=536870908

...ucmer ../reference.fasta ../query.fa 1: PREPARING DATA 2,3: RUNNING mummer AND CREATING CLUSTERS # reading input file "nucmer.ntref" of length 712946597 # construct suffix tree for sequence of length 712946597 # (maximum reference length is 536870908) # (maximum query length is 4294967295) # process...

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文章 An introduction to PERMANOVA and ANOSIM

PERMANOVA(Permutational Multivariate Analysis of Variance)和 ANOSIM(Analysis of Similarities)都是用于分析和比较群组间多元数据差异的统计方法。它们特别适用于生态和环境科学领域,但也可应用于其他需要分析复杂数据集的科学研究。这两...

文章 meme安装报错

...ree.h:1124:3: note: expected ‘xmlBufferPtr’ but argument is of type ‘xmlBufPtr’   xmlBufferWriteQuotedString(xmlBufferPtr buf,   ^xsltutils.c: In function ‘xsltSaveResultToString’:xsltutils.c:1758:26: error: dereferencing pointer to incomplete type  *doc_txt_le...

问题 使用GATK的GenomicsDBImport合并gvcf导入db时报错Unexpected compressed block length: 1 for /work/GATK/BN14.g.vcf.gz

...---------------------------------- 10:53:02.159 INFO  GenomicsDBImport - The Genome Analysis Toolkit (GATK) v4.4.0.0 10:53:02.160 INFO  GenomicsDBImport - For support and documentation go to https://software.broadinstitute.org/gatk/ 10:53:02.160 INFO  GenomicsDBImport - Executing as root@1fea4...